Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C5Z25_RS02335 Genome accession   NZ_CP027190
Coordinates   472833..474641 (-) Length   602 a.a.
NCBI ID   WP_105451176.1    Uniprot ID   A0A2R3JM70
Organism   Lactobacillus sp. CBA3605     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 467833..479641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Z25_RS02310 (C5Z25_02310) - 468788..469426 (+) 639 WP_105451171.1 copper homeostasis protein CutC -
  C5Z25_RS02315 (C5Z25_02315) - 469474..470361 (-) 888 WP_105451172.1 RluA family pseudouridine synthase -
  C5Z25_RS02320 (C5Z25_02320) - 470358..471161 (-) 804 WP_105451173.1 NAD kinase -
  C5Z25_RS02325 (C5Z25_02325) - 471165..471824 (-) 660 WP_105451174.1 GTP pyrophosphokinase family protein -
  C5Z25_RS02330 (C5Z25_02330) - 472124..472756 (+) 633 WP_105451175.1 DsbA family protein -
  C5Z25_RS02335 (C5Z25_02335) pepF 472833..474641 (-) 1809 WP_105451176.1 oligoendopeptidase F Regulator
  C5Z25_RS02340 (C5Z25_02340) - 474720..475805 (-) 1086 WP_105451177.1 competence protein CoiA -
  C5Z25_RS02345 (C5Z25_02345) - 475898..476629 (-) 732 WP_105451178.1 adaptor protein MecA -
  C5Z25_RS02350 (C5Z25_02350) spxA 476768..477166 (-) 399 WP_105451179.1 transcriptional regulator SpxA -
  C5Z25_RS02355 (C5Z25_02355) - 477460..478203 (-) 744 WP_105451180.1 MBL fold metallo-hydrolase -
  C5Z25_RS02360 (C5Z25_02360) - 478334..478834 (+) 501 WP_105451181.1 hypothetical protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67333.45 Da        Isoelectric Point: 5.0281

>NTDB_id=275643 C5Z25_RS02335 WP_105451176.1 472833..474641(-) (pepF) [Lactobacillus sp. CBA3605]
MVATKHLPTRSAVPTQLTWDLTPIYADQAAYDADVKQIQVALPTVSALAEHFTDSATTVLAGIQGVLDLYRRLEKVAVYA
SLKSDQDTGNSQNQALDDQAGSLTAQVSSATAWFEPAILTLTPAQLDTYLDDNVALRDYRHLLDTVRLQKGHVLSTAEES
LLAGASDIFAASEKTFGVLNNADFEFPVVNDEQGNPVKLSQGVYGVLLESVNPAVRREAFTALYQVYSQFRRTLATTLAS
QVKVHNFVAQAHHYPDARTAALSANQIPTQVYDTLVTTVDDHLDLLHRYVALRKSILNVDELHMYDLYTPLTGQPELTYT
YEQAQATILKALKVLGPDYLKAVKTAFNSRWIDVVENQGKRSGAYSSGMYDTAPYILLNWQDNIDNLYTLVHEMGHSMHS
YFTTHQQPYQYGDYAIFVAEIASTTNENLLTNYLLAHETDPKVRAYVLNYYLDGFKGTLFRQTQFAEFEQWLHEQAAAGQ
ALTADRLSAHYLKLNQHYYGDAVVSDPQIADEWARIPHFYYNYYVYQYATGFAAASTLAQKISTNEPGAVKAYLSYLKAG
SSEFPIEVMRNAGVDMTQSAYLTAAFTVFEQRLTEFEQLIKA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=275643 C5Z25_RS02335 WP_105451176.1 472833..474641(-) (pepF) [Lactobacillus sp. CBA3605]
ATGGTAGCAACGAAGCACCTACCGACGCGGTCAGCCGTCCCGACGCAACTGACCTGGGACTTAACGCCCATTTATGCAGA
TCAAGCCGCTTATGATGCGGATGTTAAACAAATTCAAGTGGCTTTGCCAACGGTTTCAGCTTTAGCTGAACATTTTACAG
ATTCGGCAACGACTGTTTTAGCAGGGATTCAAGGTGTTTTAGACCTGTATCGGCGGTTAGAAAAAGTCGCCGTTTATGCG
AGCTTAAAGAGTGATCAAGATACAGGTAATAGTCAAAATCAGGCATTAGATGATCAAGCGGGGAGCTTGACGGCGCAAGT
TTCATCAGCGACCGCTTGGTTTGAACCCGCAATTTTAACGTTGACACCGGCGCAATTGGACACGTATTTGGATGATAATG
TCGCTTTACGTGATTATCGCCATTTATTAGACACCGTGCGGTTACAAAAAGGGCACGTCTTATCAACCGCTGAAGAATCG
CTTTTAGCTGGGGCCAGTGATATCTTTGCGGCTTCTGAAAAAACTTTTGGTGTGTTGAATAATGCAGATTTTGAATTCCC
AGTTGTTAATGATGAACAAGGTAATCCCGTTAAGTTATCACAGGGCGTTTATGGCGTCTTACTGGAATCAGTTAACCCCG
CTGTTCGCCGTGAAGCTTTTACGGCATTATATCAAGTTTATTCTCAATTTCGGCGGACGTTGGCCACTACTTTGGCTAGC
CAAGTGAAAGTGCATAATTTTGTGGCCCAAGCGCATCACTATCCAGATGCCCGGACGGCAGCTTTAAGTGCGAATCAAAT
TCCAACCCAGGTTTATGACACGTTAGTTACGACGGTCGATGACCATTTAGACTTACTTCATCGCTATGTCGCACTCCGAA
AATCAATTTTAAACGTTGATGAGTTGCATATGTATGATTTATATACACCATTAACTGGGCAACCAGAATTGACCTATACT
TATGAACAGGCCCAAGCGACTATCTTAAAGGCGTTAAAAGTTCTCGGCCCTGATTATTTAAAAGCAGTCAAAACAGCCTT
TAATTCACGCTGGATTGACGTTGTGGAGAACCAAGGTAAACGGAGTGGGGCCTACTCGTCGGGAATGTATGATACGGCGC
CTTATATTTTATTGAATTGGCAAGATAATATCGATAATTTATATACGTTGGTCCATGAAATGGGTCATAGTATGCATTCG
TATTTTACGACGCATCAACAACCTTATCAGTATGGCGATTATGCGATTTTCGTGGCTGAAATTGCTTCCACGACAAATGA
AAATTTGCTGACCAATTATCTGTTAGCCCATGAAACTGATCCTAAGGTTCGTGCTTACGTGCTTAACTATTATTTGGATG
GTTTTAAGGGGACTTTATTCCGACAAACGCAGTTCGCTGAATTTGAGCAGTGGTTACATGAACAAGCAGCTGCGGGTCAA
GCGTTAACGGCTGACCGACTTTCAGCACACTATCTAAAGCTCAATCAGCACTATTATGGCGATGCTGTAGTCAGCGATCC
TCAAATTGCGGATGAGTGGGCACGAATTCCACATTTCTATTATAATTATTATGTTTATCAATATGCGACTGGTTTTGCTG
CTGCGTCAACGCTGGCTCAAAAGATTTCCACAAATGAACCAGGAGCGGTTAAAGCGTATCTGAGCTATTTGAAGGCTGGC
TCTTCCGAATTTCCAATTGAGGTGATGCGAAATGCGGGCGTAGATATGACACAGTCAGCTTATTTAACAGCTGCCTTTAC
TGTTTTTGAACAACGGTTAACTGAATTTGAACAATTAATTAAAGCCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(118-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3JM70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

98.339

0.505

Multiple sequence alignment