Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D3Z18_RS08135 Genome accession   NZ_CP032316
Coordinates   1488110..1488604 (+) Length   164 a.a.
NCBI ID   WP_038401491.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain HPC5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1483110..1493604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z18_RS08120 (D3Z18_08120) - 1484496..1485674 (-) 1179 WP_002887818.1 metal-dependent hydrolase -
  D3Z18_RS08125 (D3Z18_08125) gpsA 1485684..1486580 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  D3Z18_RS08130 (D3Z18_08130) gatB 1486577..1487995 (-) 1419 WP_038401490.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  D3Z18_RS08135 (D3Z18_08135) luxS 1488110..1488604 (+) 495 WP_038401491.1 S-ribosylhomocysteine lyase Regulator
  D3Z18_RS08140 (D3Z18_08140) - 1488915..1489907 (+) 993 WP_038401492.1 isopenicillin N synthase family oxygenase -
  D3Z18_RS08145 (D3Z18_08145) - 1489918..1490688 (+) 771 WP_038401493.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  D3Z18_RS08150 (D3Z18_08150) metE 1490700..1492964 (+) 2265 WP_038401494.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18241.20 Da        Isoelectric Point: 6.3290

>NTDB_id=275618 D3Z18_RS08135 WP_038401491.1 1488110..1488604(+) (luxS) [Campylobacter jejuni subsp. jejuni strain HPC5]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMGEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=275618 D3Z18_RS08135 WP_038401491.1 1488110..1488604(+) (luxS) [Campylobacter jejuni subsp. jejuni strain HPC5]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGGGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701