Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D3Z18_RS00165 Genome accession   NZ_CP032316
Coordinates   25883..27388 (-) Length   501 a.a.
NCBI ID   WP_002892655.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain HPC5     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 20883..32388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z18_RS00135 (D3Z18_00135) - 21086..22270 (-) 1185 WP_038400906.1 metallophosphoesterase -
  D3Z18_RS00140 (D3Z18_00140) - 22280..22489 (-) 210 WP_038400908.1 alkylphosphonate utilization protein -
  D3Z18_RS00145 (D3Z18_00145) - 22482..23201 (-) 720 WP_002873212.1 TerC family protein -
  D3Z18_RS00150 (D3Z18_00150) purN 23273..23839 (-) 567 WP_002873213.1 phosphoribosylglycinamide formyltransferase -
  D3Z18_RS00155 (D3Z18_00155) - 23830..25199 (-) 1370 Protein_28 NAD(P)H-hydrate dehydratase -
  D3Z18_RS00160 (D3Z18_00160) - 25183..25881 (-) 699 WP_002826913.1 NYN domain-containing protein -
  D3Z18_RS00165 (D3Z18_00165) comM 25883..27388 (-) 1506 WP_002892655.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D3Z18_RS00170 (D3Z18_00170) def 27385..27912 (-) 528 WP_002851936.1 peptide deformylase -
  D3Z18_RS00175 (D3Z18_00175) clpP 27948..28532 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D3Z18_RS00180 (D3Z18_00180) tig 28532..29866 (-) 1335 WP_038400913.1 trigger factor -
  D3Z18_RS00185 (D3Z18_00185) folE 30010..30582 (+) 573 WP_002867111.1 GTP cyclohydrolase I FolE -
  D3Z18_RS00190 (D3Z18_00190) fliI 30582..31967 (+) 1386 WP_002867112.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56461.52 Da        Isoelectric Point: 8.7417

>NTDB_id=275586 D3Z18_RS00165 WP_002892655.1 25883..27388(-) (comM) [Campylobacter jejuni subsp. jejuni strain HPC5]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLNEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKIIYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNISKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=275586 D3Z18_RS00165 WP_002892655.1 25883..27388(-) (comM) [Campylobacter jejuni subsp. jejuni strain HPC5]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTAAAAAAGCTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGTTTTTCTCACAATCATCCTTTATTTGCAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGACATCAAAGGGCAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGTATGTGTGCTAAACGCCTTGTT
TATATCATGCCTCCTCAAAGTTTAAATGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCTA
GAATTGGAGAAGTCGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCATTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTAGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTATTGGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAGCAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.695

99.601

0.475

Multiple sequence alignment