Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CSB70_RS21945 Genome accession   NZ_CP027178
Coordinates   50831..51691 (-) Length   286 a.a.
NCBI ID   WP_001152278.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AR_0070     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 45831..56691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB70_RS00215 (CSB70_0049) - 46722..48032 (+) 1311 WP_002055139.1 tetratricopeptide repeat protein -
  CSB70_RS00220 (CSB70_0050) - 48109..48435 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  CSB70_RS00225 (CSB70_0051) rlmB 48537..49286 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CSB70_RS00230 (CSB70_0052) - 49322..50236 (+) 915 WP_000075015.1 DMT family transporter -
  CSB70_RS00235 (CSB70_0053) coaE 50233..50829 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  CSB70_RS21945 (CSB70_0054) pilD 50831..51691 (-) 861 WP_001152278.1 prepilin peptidase Machinery gene
  CSB70_RS00245 (CSB70_0055) pilC 51691..52917 (-) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  CSB70_RS00250 (CSB70_0056) pilB 52947..54659 (-) 1713 WP_001274987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CSB70_RS00255 (CSB70_0057) tpiA 54950..55744 (+) 795 WP_000016940.1 triose-phosphate isomerase -
  CSB70_RS00260 (CSB70_0058) secG 55757..56086 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32056.47 Da        Isoelectric Point: 7.1041

>NTDB_id=275553 CSB70_RS21945 WP_001152278.1 50831..51691(-) (pilD) [Acinetobacter baumannii strain AR_0070]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=275553 CSB70_RS21945 WP_001152278.1 50831..51691(-) (pilD) [Acinetobacter baumannii strain AR_0070]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

99.301

100

0.993
  pilD Acinetobacter nosocomialis M2

98.951

100

0.99
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.768

94.755

0.5
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441

Multiple sequence alignment