Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SSA_RS09315 Genome accession   NC_009009
Coordinates   1899366..1900097 (-) Length   243 a.a.
NCBI ID   WP_023916835.1    Uniprot ID   -
Organism   Streptococcus sanguinis SK36     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1894366..1905097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS09285 (SSA_1899) rnpM 1894533..1894829 (-) 297 WP_011837436.1 RNase P modulator RnpM -
  SSA_RS09290 (SSA_1900) nusA 1894840..1896096 (-) 1257 WP_164926002.1 transcription termination factor NusA -
  SSA_RS09295 (SSA_1901) rimP 1896156..1896644 (-) 489 WP_032908080.1 ribosome maturation factor RimP -
  SSA_RS09300 (SSA_1902) trmB 1896843..1897481 (-) 639 WP_002893561.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SSA_RS09305 (SSA_1903) ccrZ 1897478..1898272 (-) 795 WP_011837438.1 cell cycle regulator CcrZ -
  SSA_RS09310 (SSA_1904) - 1898323..1899369 (-) 1047 WP_002918065.1 ABC transporter permease -
  SSA_RS09315 (SSA_1905) pptA 1899366..1900097 (-) 732 WP_023916835.1 ABC transporter ATP-binding protein Regulator
  SSA_RS09320 (SSA_1906) - 1900166..1900576 (+) 411 WP_002918069.1 HIT family protein -
  SSA_RS09325 (SSA_1907) - 1900586..1900873 (+) 288 WP_002896907.1 hypothetical protein -
  SSA_RS09330 (SSA_1909) brpA 1900994..1902232 (-) 1239 WP_002927574.1 biofilm formation/cell division transcriptional regulator BrpA -
  SSA_RS09335 (SSA_1910) - 1902241..1902762 (-) 522 WP_002918072.1 GNAT family N-acetyltransferase -
  SSA_RS09340 (SSA_1911) tsaE 1902755..1903195 (-) 441 WP_002918074.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SSA_RS09345 (SSA_1913) - 1903335..1904756 (-) 1422 WP_011837440.1 NCS2 family permease -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27230.75 Da        Isoelectric Point: 4.8143

>NTDB_id=27538 SSA_RS09315 WP_023916835.1 1899366..1900097(-) (pptA) [Streptococcus sanguinis SK36]
MLEIKELTGGYVNIPVLKDVNFEVGNGQLVGLIGLNGAGKSTTINEIIGLLTPYKGQIQIDGLELRTNPSDYRKKIGFIP
ETPSLYEELTLREHIETVAMAYDIEQETAFKRVDKLLEMFRLKEKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPVAIADLIQLLDEEKKKGKSILMSTHVLDSAEKMCDSFVILHKGQVRAKGSLTELRAQFQMPDASLNDIYLALTEE
AAL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=27538 SSA_RS09315 WP_023916835.1 1899366..1900097(-) (pptA) [Streptococcus sanguinis SK36]
ATGTTAGAAATCAAAGAGCTTACGGGCGGCTATGTTAATATCCCGGTTTTAAAGGATGTCAACTTTGAAGTGGGCAATGG
CCAGCTGGTTGGTCTGATTGGTCTCAACGGTGCGGGCAAGTCCACGACTATCAATGAGATTATTGGTCTTTTGACGCCTT
ATAAGGGGCAGATTCAAATTGATGGACTGGAGCTGCGGACCAATCCCAGCGATTATCGCAAGAAAATCGGTTTTATTCCG
GAAACGCCTAGCCTCTACGAAGAATTGACCCTGCGCGAGCACATTGAGACGGTAGCTATGGCTTACGACATTGAGCAGGA
AACAGCTTTTAAACGCGTGGATAAGCTATTGGAAATGTTCCGACTCAAGGAAAAACTGGATTGGTTCCCTGTTCACTTTT
CAAAGGGGATGAAGCAAAAAGTGATGATTATCTGTGCTTTTGTAGTTGATCCCAGCCTTTTTATCGTAGATGAGCCTTTT
CTGGGTCTGGATCCGGTAGCTATTGCAGACCTTATCCAGCTCTTGGATGAGGAAAAGAAGAAGGGTAAGTCCATTCTGAT
GAGCACCCATGTTCTGGACTCTGCTGAGAAGATGTGCGATAGTTTTGTAATTCTGCACAAGGGTCAAGTGCGGGCCAAGG
GTAGCTTGACTGAGTTGCGTGCTCAATTTCAAATGCCGGATGCTAGTCTGAATGACATCTATCTAGCCCTGACAGAAGAG
GCGGCGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.059

98.354

0.728
  pptA Streptococcus thermophilus LMD-9

73.222

98.354

0.72

Multiple sequence alignment