Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CSB93_RS17965 Genome accession   NZ_CP027169
Coordinates   3471152..3471787 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas paraeruginosa strain AR_0356     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3466152..3476787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB93_RS17950 (CSB93_3420) - 3466848..3468092 (+) 1245 WP_003156869.1 lipoprotein-releasing ABC transporter permease subunit -
  CSB93_RS17955 (CSB93_3421) - 3468193..3468726 (-) 534 WP_034078473.1 DUF2062 domain-containing protein -
  CSB93_RS17960 (CSB93_3422) comA 3468857..3471079 (+) 2223 WP_105446776.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CSB93_RS17965 (CSB93_3423) exbB 3471152..3471787 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CSB93_RS17970 (CSB93_3424) - 3471784..3472224 (+) 441 WP_012075163.1 ExbD/TolR family protein -
  CSB93_RS17975 (CSB93_3425) lpxK 3472224..3473222 (+) 999 WP_058145855.1 tetraacyldisaccharide 4'-kinase -
  CSB93_RS17980 (CSB93_3426) - 3473260..3473445 (+) 186 WP_003157522.1 Trm112 family protein -
  CSB93_RS17985 (CSB93_3427) kdsB 3473445..3474209 (+) 765 WP_012075164.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CSB93_RS17990 (CSB93_3428) - 3474209..3474673 (+) 465 WP_012075165.1 low molecular weight protein-tyrosine-phosphatase -
  CSB93_RS17995 (CSB93_3429) murB 3474670..3475689 (+) 1020 WP_053813706.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=275379 CSB93_RS17965 WP_003091163.1 3471152..3471787(+) (exbB) [Pseudomonas paraeruginosa strain AR_0356]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=275379 CSB93_RS17965 WP_003091163.1 3471152..3471787(+) (exbB) [Pseudomonas paraeruginosa strain AR_0356]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCACTGGGCGAGATCCTCGCTGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCTTCCGGCGTCATCCACGAACTTGAGCGCTATCT
CAACGCCCTCGGCACCATCGCCGCGATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCGCTGATCACCACGGCCGCC
GGCCTGCTGGTGGCGATCCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGTCGCGTCGACGAGCTGGTGATCGCCATGGA
ACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment