Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CSB93_RS02015 Genome accession   NZ_CP027169
Coordinates   124437..125798 (-) Length   453 a.a.
NCBI ID   WP_012077343.1    Uniprot ID   A0A2R3J474
Organism   Pseudomonas paraeruginosa strain AR_0356     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 119437..130798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB93_RS01990 (CSB93_0117) yjiA 119601..120605 (-) 1005 WP_058145798.1 GTPase -
  CSB93_RS01995 (CSB93_0118) - 120665..120868 (-) 204 WP_003094856.1 YbdD/YjiX family protein -
  CSB93_RS02000 (CSB93_0119) - 120917..122983 (-) 2067 WP_012077342.1 carbon starvation CstA family protein -
  CSB93_RS02005 (CSB93_0121) - 123344..123850 (-) 507 WP_053814582.1 DUF3015 domain-containing protein -
  CSB93_RS02010 (CSB93_0122) mapZ 124053..124430 (+) 378 WP_003153057.1 cyclic di-GMP-binding protein MapZ -
  CSB93_RS02015 (CSB93_0123) radA 124437..125798 (-) 1362 WP_012077343.1 DNA repair protein RadA Machinery gene
  CSB93_RS02020 (CSB93_0124) - 125908..126342 (+) 435 WP_012077344.1 CopD family protein -
  CSB93_RS02025 (CSB93_0125) - 126399..126653 (-) 255 WP_012077345.1 YdcH family protein -
  CSB93_RS02030 (CSB93_0126) - 126728..127294 (-) 567 WP_074197475.1 ankyrin repeat domain-containing protein -
  CSB93_RS02035 (CSB93_0127) katB 127350..128891 (-) 1542 WP_043101253.1 catalase KatB -
  CSB93_RS02040 (CSB93_0128) - 129079..130632 (-) 1554 WP_053814584.1 catalase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48436.85 Da        Isoelectric Point: 6.8357

>NTDB_id=275361 CSB93_RS02015 WP_012077343.1 124437..125798(-) (radA) [Pseudomonas paraeruginosa strain AR_0356]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVIEAAPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSAELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRVPALYVTGEESQQQVAMRARRLSLPEDRLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=275361 CSB93_RS02015 WP_012077343.1 124437..125798(-) (radA) [Pseudomonas paraeruginosa strain AR_0356]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCTTGGTGGAGACCGTGATCGAGGCCGCGCCGAGCGGTTCCGGGCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAAGTCAGCGTCGAGGAAATGCCGCGCTTCACCACCGGCTCGGCCGAGCTGGACCGG
GTGCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATCCTCCT
GCAGACCCTGTGCAACCTGGCGACCCGGGTGCCGGCCTTGTATGTCACCGGCGAGGAGTCGCAACAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGCTGCCGGAAGACCGGCTCAAGGTGATGACCGAGACCAGCATCGAGACCATCATCGCCACCGCC
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTGCGCGAAAGCGCCGCCATGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAAGGCGAG
TCCGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGGCATGAC
CGACAAGGGCCTCAAGGAGGTCAGCAATCCTTCGGCGATCTTCCTCACCCGCGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAGGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGATACCAGCCACCTGGCCAACCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCATCGCCACGGCGGCATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTACTGGAAACCGCCTCCGACCTGGCGCTGATGGCGG
CGGTGATGTCGAGCCTGCGCAACCGGCCGTTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCGGGCGAGGTG
CGCCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGCTTCAAGCGCGCCATAGTGCCCCTCGGCAA
CGCACCGAAGGAAGCCCCGGCGGGCTTGCAGGTGATCGCCGTGACGCGCCTGGAGCAGGCCCTGGACGCCCTCTTCGAAT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3J474

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

100

0.486
  radA Streptococcus pneumoniae Rx1

46.288

100

0.468
  radA Streptococcus pneumoniae D39

46.288

100

0.468
  radA Streptococcus pneumoniae R6

46.288

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.288

100

0.468
  radA Streptococcus mitis SK321

46.389

100

0.468
  radA Streptococcus mitis NCTC 12261

46.171

100

0.466

Multiple sequence alignment