Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AM446_RS17630 Genome accession   NZ_CP032261
Coordinates   3053468..3054895 (+) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0067     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3048468..3059895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM446_RS17590 (AM446_17830) yeeW 3048652..3048846 (+) 195 WP_000988600.1 DUF5983 family protein -
  AM446_RS17595 (AM446_17835) - 3048892..3048972 (+) 81 Protein_2963 hypothetical protein -
  AM446_RS17600 (AM446_17840) - 3049261..3049407 (-) 147 Protein_2964 transposase domain-containing protein -
  AM446_RS17605 (AM446_17845) - 3049461..3049643 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AM446_RS17610 (AM446_17850) tmaR 3049744..3050073 (-) 330 WP_000450409.1 DUF496 family protein -
  AM446_RS17615 (AM446_17855) yeeA 3050245..3051303 (-) 1059 WP_001200890.1 FUSC family protein -
  AM446_RS17620 (AM446_17860) sbmC 3051501..3051974 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  AM446_RS17625 (AM446_17865) dacD 3052093..3053259 (-) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AM446_RS17630 (AM446_17870) sbcB 3053468..3054895 (+) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  AM446_RS17635 (AM446_17875) tsuB 3054938..3055165 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AM446_RS17640 (AM446_17880) tsuA 3055179..3056237 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  AM446_RS17645 (AM446_17885) plaP 3056416..3057774 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AM446_RS17650 (AM446_17890) yoeI 3057764..3057826 (-) 63 WP_010723108.1 membrane protein YoeI -
  AM446_RS17655 (AM446_17895) tnpA 3058033..3058491 (-) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  AM446_RS17665 (AM446_17905) yeeY 3058752..3059681 (-) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=275302 AM446_RS17630 WP_021523141.1 3053468..3054895(+) (sbcB) [Escherichia coli strain AR_0067]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=275302 AM446_RS17630 WP_021523141.1 3053468..3054895(+) (sbcB) [Escherichia coli strain AR_0067]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581