Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CSC02_RS03815 Genome accession   NZ_CP027142
Coordinates   751362..751988 (+) Length   208 a.a.
NCBI ID   WP_023299743.1    Uniprot ID   A0A9X7L0J6
Organism   Enterobacter hormaechei subsp. hoffmannii strain AR_0365     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 746362..756988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC02_RS03795 (CSC02_0775) - 746761..748521 (-) 1761 WP_105322612.1 Lon protease family protein -
  CSC02_RS03800 (CSC02_0777) matP 748708..749160 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  CSC02_RS03805 (CSC02_0778) ompA 749226..750278 (-) 1053 WP_017694761.1 porin OmpA -
  CSC02_RS03810 (CSC02_0779) sulA 750635..751144 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  CSC02_RS03815 (CSC02_0780) sxy/tfoX 751362..751988 (+) 627 WP_023299743.1 TfoX/Sxy family DNA transformation protein Regulator
  CSC02_RS03820 (CSC02_0781) yccS 751945..754107 (-) 2163 WP_105322613.1 YccS family putative transporter -
  CSC02_RS03825 (CSC02_0782) - 754126..754572 (-) 447 WP_023299745.1 YccF domain-containing protein -
  CSC02_RS03830 (CSC02_0783) helD 754695..756749 (+) 2055 WP_023299746.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.54 Da        Isoelectric Point: 9.4592

>NTDB_id=275223 CSC02_RS03815 WP_023299743.1 751362..751988(+) (sxy/tfoX) [Enterobacter hormaechei subsp. hoffmannii strain AR_0365]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=275223 CSC02_RS03815 WP_023299743.1 751362..751988(+) (sxy/tfoX) [Enterobacter hormaechei subsp. hoffmannii strain AR_0365]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCGTCCTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment