Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CSC06_RS03885 Genome accession   NZ_CP027140
Coordinates   339470..340099 (-) Length   209 a.a.
NCBI ID   WP_105394125.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0369     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 334470..345099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC06_RS03870 (CSC06_0362) helD 334712..336766 (-) 2055 WP_001338439.1 DNA helicase IV -
  CSC06_RS03875 (CSC06_0363) yccF 336889..337335 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CSC06_RS03880 (CSC06_0364) yccS 337345..339507 (+) 2163 WP_000875061.1 YccS family putative transporter -
  CSC06_RS03885 (CSC06_0365) sxy/tfoX 339470..340099 (-) 630 WP_105394125.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CSC06_RS03890 (CSC06_0366) sulA 340318..340827 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CSC06_RS03900 (CSC06_0367) ompA 341184..342224 (+) 1041 WP_000750416.1 porin OmpA -
  CSC06_RS03905 (CSC06_0368) matP 342300..342752 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CSC06_RS03910 (CSC06_0369) ycbZ 342938..344698 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24130.95 Da        Isoelectric Point: 9.3881

>NTDB_id=275198 CSC06_RS03885 WP_105394125.1 339470..340099(-) (sxy/tfoX) [Escherichia coli strain AR_0369]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYSVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=275198 CSC06_RS03885 WP_105394125.1 339470..340099(-) (sxy/tfoX) [Escherichia coli strain AR_0369]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACAGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment