Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   C7R87_RS19125 Genome accession   NZ_CP027123
Coordinates   3678035..3678853 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AR_0056     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3673035..3683853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R87_RS19090 - 3673618..3673747 (-) 130 Protein_3476 hypothetical protein -
  C7R87_RS19095 (C7R87_3610) rpoZ 3673786..3674064 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  C7R87_RS19100 (C7R87_3611) gmk 3674137..3674766 (-) 630 WP_000015937.1 guanylate kinase -
  C7R87_RS19105 (C7R87_3612) ispH 3674889..3675839 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C7R87_RS19110 (C7R87_3613) fimU 3676009..3676482 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7R87_RS19115 (C7R87_3614) pilV 3676476..3677036 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  C7R87_RS19120 (C7R87_3615) pilW 3677037..3678038 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  C7R87_RS19125 (C7R87_3616) pilX 3678035..3678853 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7R87_RS19130 (C7R87_3617) pilY1 3678865..3682719 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  C7R87_RS19135 (C7R87_3618) pilY2 3682732..3683214 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  C7R87_RS19140 (C7R87_3619) pilE 3683211..3683636 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=275145 C7R87_RS19125 WP_000149374.1 3678035..3678853(+) (pilX) [Acinetobacter baumannii strain AR_0056]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=275145 C7R87_RS19125 WP_000149374.1 3678035..3678853(+) (pilX) [Acinetobacter baumannii strain AR_0056]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment