Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AM340_RS27610 Genome accession   NZ_CP032204
Coordinates   5349838..5350443 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain AR_0013     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5344838..5355443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM340_RS27585 (AM340_27915) aes 5344941..5345900 (+) 960 WP_000801813.1 acetyl esterase -
  AM340_RS27590 (AM340_27920) hemH 5345897..5346859 (-) 963 WP_001250105.1 ferrochelatase -
  AM340_RS27595 (AM340_27925) adk 5346991..5347635 (-) 645 WP_001313630.1 adenylate kinase -
  AM340_RS27605 (AM340_27935) htpG 5347854..5349728 (-) 1875 WP_000678196.1 molecular chaperone HtpG -
  AM340_RS27610 (AM340_27940) recR 5349838..5350443 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AM340_RS27615 (AM340_27945) ybaB 5350443..5350772 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AM340_RS27620 (AM340_27950) dnaX 5350825..5352756 (-) 1932 WP_000122016.1 DNA polymerase III subunit gamma/tau -
  AM340_RS27625 (AM340_27955) apt 5352885..5353436 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AM340_RS27630 (AM340_27965) ybaN 5353589..5353966 (-) 378 WP_001188905.1 DUF454 family protein -
  AM340_RS27635 (AM340_27970) priC 5354036..5354563 (+) 528 WP_000844850.1 primosomal replication protein N'' -
  AM340_RS27640 (AM340_27975) rsmS 5354577..5354738 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=275068 AM340_RS27610 WP_001195025.1 5349838..5350443(-) (recR) [Escherichia coli strain AR_0013]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=275068 AM340_RS27610 WP_001195025.1 5349838..5350443(-) (recR) [Escherichia coli strain AR_0013]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443