Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   C5695_RS13310 Genome accession   NZ_CP027116
Coordinates   2553926..2556250 (-) Length   774 a.a.
NCBI ID   WP_117731134.1    Uniprot ID   A0AAD0MM71
Organism   Bacillus pumilus strain 145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2548926..2561250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS13295 (C5695_13350) dtd 2550576..2551019 (-) 444 WP_117731132.1 D-aminoacyl-tRNA deacylase -
  C5695_RS13300 (C5695_13355) - 2551038..2553248 (-) 2211 WP_117731133.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  C5695_RS13305 (C5695_13360) - 2553390..2553902 (-) 513 WP_034279900.1 adenine phosphoribosyltransferase -
  C5695_RS13310 (C5695_13365) recJ 2553926..2556250 (-) 2325 WP_117731134.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  C5695_RS13315 (C5695_13370) - 2556332..2556679 (-) 348 WP_117731135.1 lipopolysaccharide assembly LapA domain-containing protein -
  C5695_RS13320 (C5695_13375) - 2556778..2557269 (-) 492 WP_117731136.1 cation:proton antiporter regulatory subunit -
  C5695_RS13325 (C5695_13380) secDF 2557561..2559789 (-) 2229 WP_117731137.1 protein translocase subunit SecDF -
  C5695_RS13330 (C5695_13385) - 2559829..2560125 (-) 297 WP_117731138.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87307.96 Da        Isoelectric Point: 4.9935

>NTDB_id=275065 C5695_RS13310 WP_117731134.1 2553926..2556250(-) (recJ) [Bacillus pumilus strain 145]
MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFHDPFLLKGMKEAVERINKAIDEQ
ESIVIFGDYDADGVTSTSVLLHTLKERSAKVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAAVKEARIAKEL
GLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLPAQLLDLAAIGTIADLVPLHDENRWL
AKKGLMQLRQSNRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLMTEDKDEAEELARFVQELNKE
RQKIVSTITEEAIQMVEETGDDQSAIVVAKAGWNPGVVGIVASKLTDTFCRPAIVLGIDEETQMAKGSARSIPGFDLFFH
LSKCRDILPHFGGHPMAAGMTLQADDVPLLRERLNQYANETLTEEDFIPIQRVDAVCKVDELTVEAIEEAGLLSPFGMQN
PKPFIMIEDARLEEIRTIGANQNHIKMSLKDEEKLLDCVGFHQGKLKEEIVPGSRISVVGEMSINEWNNRKKPQLMLKDA
RVDEWQLFDLRGKKDWEKTVSTLDSEKYMVVCFDEETKQEVNIPIHHVHAENVSTFDVEGKYVVFADVPADEHLLKQLLD
NQKPARIYTVFQRKEDHFMSSFPSRDQFKWFYGFLFKRGSFPIKEQGMELAKHRGWTKDTIIFMTKVFFELGFVKIENGV
LSIVRDAPKKDLTASASYTAKQRLMELDQTLTYSSAKELKEWLNSKMSEVSPVL

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=275065 C5695_RS13310 WP_117731134.1 2553926..2556250(-) (recJ) [Bacillus pumilus strain 145]
ATGTTATTATCCAAAATGCGCTGGGAATATGAACATCCAAGCGAAGAAAAAGTGAAATCACTCTCTGAAAATCTGAATAT
TTCAGCGCTGACTGCATCGCTTCTTGTAAAAAGAGGACTCGAAGAAGTAGAAGAAGCGAGGTCTTTTTTATTTGATCAAA
AAGCCGAATTTCATGATCCATTTCTATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCGATCGACGAGCAG
GAATCGATTGTGATCTTCGGAGACTACGATGCGGATGGTGTGACAAGTACATCTGTGCTTTTACATACATTAAAAGAGCG
GTCTGCGAAAGTAGACTTTTATATTCCAGATCGATTTAAAGAAGGCTATGGGCCTAATGAACAGGCTTTTCGATATATCA
AAGAGCAAGGTGCATCTCTTGTCATCACGGTCGATACAGGCATTGCAGCTGTAAAAGAAGCACGTATTGCGAAAGAATTA
GGGTTAGACCTGATCATTACAGATCACCATGAACCAAGTGAGGAGCTGCCTGAGGCACTTGCGATTGTCCATCCTAAGCA
GCCAGGCTGTGAGTATCCTTTTAAAGAACTCGCCGGTGTAGGCGTAGCATTTAAAGTCGCGCATGCACTCCTTGGAAAGC
TGCCAGCTCAGCTGTTAGATCTTGCGGCGATTGGGACAATTGCAGATCTTGTGCCGCTTCATGACGAGAATAGATGGCTC
GCCAAAAAAGGGCTTATGCAGCTTCGACAGTCGAATAGACCGGGGCTGAAAGCGTTATTGAAAGAAGCAGGCGCCACTCT
TGAAGAGGCAAATGAGGAAACAGTCGGTTTTCAAATTGCGCCAAGGCTAAATGCTGTAGGGCGAATTGAGCAGGCAGATC
CAGCTGTTCATCTTCTCATGACAGAGGATAAGGATGAAGCAGAAGAGCTCGCTCGTTTTGTACAAGAACTGAATAAAGAA
CGTCAAAAAATCGTGAGTACGATCACAGAAGAAGCCATTCAAATGGTTGAAGAGACAGGCGATGACCAATCTGCAATAGT
TGTAGCGAAAGCTGGCTGGAATCCGGGGGTTGTCGGAATTGTTGCCTCTAAATTGACGGATACTTTTTGTCGCCCGGCGA
TTGTGCTTGGAATAGACGAAGAGACGCAAATGGCAAAAGGCTCCGCTCGGAGTATTCCTGGATTTGATCTATTTTTCCAT
TTAAGCAAATGCCGGGACATCCTGCCCCATTTTGGCGGGCACCCGATGGCTGCGGGTATGACACTTCAAGCGGATGATGT
TCCTTTACTAAGGGAAAGATTAAATCAATACGCAAATGAAACGTTGACAGAAGAAGATTTTATTCCGATTCAGCGGGTCG
ATGCAGTGTGCAAGGTAGACGAATTGACGGTTGAAGCGATAGAAGAAGCGGGGCTGTTGTCACCATTCGGCATGCAGAAC
CCAAAGCCGTTCATCATGATTGAAGATGCAAGGCTTGAAGAGATCCGAACGATTGGGGCCAATCAGAATCATATAAAAAT
GTCTCTAAAAGACGAAGAAAAGCTGCTGGACTGTGTCGGTTTTCACCAGGGGAAATTGAAAGAAGAAATTGTCCCAGGGA
GCCGTATTTCTGTAGTCGGTGAAATGTCTATCAATGAATGGAATAACCGGAAGAAACCTCAGCTCATGCTAAAAGATGCC
CGAGTAGATGAATGGCAGCTGTTTGATCTGCGCGGGAAAAAGGATTGGGAAAAGACCGTCTCGACGCTTGATTCAGAAAA
ATATATGGTTGTTTGTTTTGACGAAGAAACGAAACAAGAAGTCAATATCCCTATTCATCATGTCCATGCAGAAAATGTGT
CAACATTTGATGTAGAAGGCAAGTATGTCGTCTTTGCGGACGTTCCCGCAGATGAGCACTTGCTGAAGCAGCTTTTAGAC
AACCAAAAGCCTGCTAGAATTTATACGGTTTTTCAAAGAAAAGAAGATCATTTTATGTCCTCTTTTCCTAGCCGTGACCA
ATTCAAATGGTTTTATGGATTCTTGTTTAAGCGAGGGAGTTTTCCTATCAAAGAACAAGGAATGGAGCTTGCCAAACATA
GAGGCTGGACAAAAGATACAATCATTTTTATGACAAAGGTGTTTTTTGAACTCGGTTTTGTTAAAATAGAGAATGGTGTG
CTGTCAATAGTACGTGATGCCCCTAAAAAAGATTTAACAGCATCAGCGTCCTATACAGCAAAACAACGATTGATGGAACT
CGATCAAACACTAACATATTCCTCAGCCAAAGAGCTGAAGGAATGGCTGAATAGCAAGATGAGCGAAGTCTCACCTGTGC
TTTGA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-763)

RecJ OB domain (RecJ_OB)

(453-559)

DHHA1 domain (DHHA1)

(309-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

67.696

100

0.68

Multiple sequence alignment