Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C5695_RS12300 Genome accession   NZ_CP027116
Coordinates   2370703..2371038 (+) Length   111 a.a.
NCBI ID   WP_106049802.1    Uniprot ID   A0AAD0HNL7
Organism   Bacillus pumilus strain 145     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2365703..2376038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS12280 (C5695_12330) gcvT 2366181..2367278 (-) 1098 WP_117730976.1 glycine cleavage system aminomethyltransferase GcvT -
  C5695_RS12285 (C5695_12335) - 2367839..2369509 (+) 1671 WP_117730977.1 SNF2-related protein -
  C5695_RS12290 (C5695_12340) - 2369524..2370321 (+) 798 WP_117730978.1 YqhG family protein -
  C5695_RS12295 (C5695_12345) - 2370505..2370669 (+) 165 WP_117730979.1 anti-repressor SinI family protein -
  C5695_RS12300 (C5695_12350) sinR 2370703..2371038 (+) 336 WP_106049802.1 helix-turn-helix domain-containing protein Regulator
  C5695_RS12305 (C5695_12355) - 2371106..2371906 (-) 801 WP_117730980.1 TasA family protein -
  C5695_RS12310 (C5695_12360) - 2371964..2372536 (-) 573 WP_117730981.1 signal peptidase I -
  C5695_RS12315 (C5695_12365) tapA 2372588..2373115 (-) 528 WP_117730982.1 amyloid fiber anchoring/assembly protein TapA -
  C5695_RS12320 (C5695_12370) - 2373415..2373693 (+) 279 WP_233230864.1 DUF3889 domain-containing protein -
  C5695_RS12325 (C5695_12375) - 2373727..2373924 (-) 198 WP_117733119.1 YqzE family protein -
  C5695_RS12330 (C5695_12380) comGG 2373984..2374367 (-) 384 WP_117730984.1 competence type IV pilus minor pilin ComGG -
  C5695_RS12335 (C5695_12385) comGF 2374364..2374891 (-) 528 WP_272866843.1 competence type IV pilus minor pilin ComGF -
  C5695_RS12340 (C5695_12390) comGE 2374803..2375117 (-) 315 WP_117730986.1 competence type IV pilus minor pilin ComGE -
  C5695_RS12345 (C5695_12395) comGD 2375101..2375547 (-) 447 WP_117730987.1 competence type IV pilus minor pilin ComGD -
  C5695_RS12350 (C5695_12400) comGC 2375540..2375833 (-) 294 WP_117730988.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12973.58 Da        Isoelectric Point: 5.2831

>NTDB_id=275059 C5695_RS12300 WP_106049802.1 2370703..2371038(+) (sinR) [Bacillus pumilus strain 145]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=275059 C5695_RS12300 WP_106049802.1 2370703..2371038(+) (sinR) [Bacillus pumilus strain 145]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTCC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
ACAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937

Multiple sequence alignment