Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C5695_RS11145 Genome accession   NZ_CP027116
Coordinates   2165662..2166279 (+) Length   205 a.a.
NCBI ID   WP_117733103.1    Uniprot ID   A0AAD0MQC7
Organism   Bacillus pumilus strain 145     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2160662..2171279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS11105 (C5695_11155) - 2160828..2161946 (+) 1119 WP_233230858.1 NADH-dependent flavin oxidoreductase -
  C5695_RS11110 (C5695_11160) - 2161998..2162504 (-) 507 WP_117730787.1 PTS glucose transporter subunit IIA -
  C5695_RS11115 (C5695_11165) - 2162673..2163092 (+) 420 WP_117730788.1 Hsp20/alpha crystallin family protein -
  C5695_RS11120 (C5695_11170) - 2163113..2163562 (-) 450 WP_117730789.1 YppG family protein -
  C5695_RS11125 (C5695_11175) - 2163671..2164051 (-) 381 WP_233230727.1 YppE family protein -
  C5695_RS11130 (C5695_11180) - 2164101..2164334 (-) 234 WP_233230728.1 DUF5446 family protein -
  C5695_RS11135 (C5695_11185) sspM 2164531..2164635 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  C5695_RS11140 (C5695_11190) - 2164659..2165615 (-) 957 WP_117730792.1 DUF2515 domain-containing protein -
  C5695_RS11145 (C5695_11195) recU 2165662..2166279 (+) 618 WP_117733103.1 Holliday junction resolvase RecU Machinery gene
  C5695_RS11150 (C5695_11200) - 2166317..2169016 (+) 2700 WP_117730793.1 PBP1A family penicillin-binding protein -
  C5695_RS11155 (C5695_11205) - 2169051..2169560 (-) 510 WP_117730794.1 YpoC family protein -
  C5695_RS11160 (C5695_11210) nth 2169557..2170219 (-) 663 WP_117730795.1 endonuclease III -
  C5695_RS11165 (C5695_11215) - 2170237..2170941 (-) 705 WP_117730796.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23604.66 Da        Isoelectric Point: 8.6133

>NTDB_id=275056 C5695_RS11145 WP_117733103.1 2165662..2166279(+) (recU) [Bacillus pumilus strain 145]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESEQQ

Nucleotide


Download         Length: 618 bp        

>NTDB_id=275056 C5695_RS11145 WP_117733103.1 2165662..2166279(+) (recU) [Bacillus pumilus strain 145]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACACTTGAGGCTGACTTGAATGAAACCAACCAGTACTATTTGGTTAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTAATCAAAGAAGCCTAT
TTTAAACAATCATCCACAACGGACTATAATGGGGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAACTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGCAGCAATGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

98.537

0.717

Multiple sequence alignment