Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C5695_RS08125 Genome accession   NZ_CP027116
Coordinates   1596073..1596975 (+) Length   300 a.a.
NCBI ID   WP_117730288.1    Uniprot ID   A0AAD0MLC0
Organism   Bacillus pumilus strain 145     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1591073..1601975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS08105 (C5695_08110) - 1591739..1593475 (+) 1737 WP_117730287.1 glycosyltransferase -
  C5695_RS08110 (C5695_08115) - 1593472..1593747 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  C5695_RS08115 (C5695_08120) sucC 1593924..1595084 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  C5695_RS08120 (C5695_08125) sucD 1595107..1596009 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  C5695_RS08125 (C5695_08130) dprA 1596073..1596975 (+) 903 WP_117730288.1 DNA-processing protein DprA Machinery gene
  C5695_RS08130 (C5695_08135) topA 1597169..1599244 (+) 2076 WP_117730289.1 type I DNA topoisomerase -
  C5695_RS08135 (C5695_08140) trmFO 1599315..1600619 (+) 1305 WP_117730290.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C5695_RS08140 (C5695_08145) xerC 1600682..1601599 (+) 918 WP_117730291.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34222.72 Da        Isoelectric Point: 9.3010

>NTDB_id=275051 C5695_RS08125 WP_117730288.1 1596073..1596975(+) (dprA) [Bacillus pumilus strain 145]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPKLYINEETHHFKQDRSLQKIDFTRLKQAEKNEFPIFQHIVQAYLKQNIHM
IPITSPLYPSILKHIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVQEDWMIVSGLAKGIDGLAH
KECIRHKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTRGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFHSVQYTEPL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=275051 C5695_RS08125 WP_117730288.1 1596073..1596975(+) (dprA) [Bacillus pumilus strain 145]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTAAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTAAAACAAGCCGAAAAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCATATG
ATTCCCATCACATCACCCTTATATCCCAGCATACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCATCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTACAGGAAGATTGGATGATTGTGAGTGGCTTAGCAAAAGGAATTGATGGACTTGCACAT
AAAGAGTGCATAAGACATAAAGGGAAAACCATCGGTATTATAGCAGGCGGCTTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTATCCGAGCATCCGCCTTATGTCAAACCAGAAAAATGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCTCTGACAAGAGGAACCATTGTGATACAGTGCAAAGAAAAGAGCGGTTCGCTC
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCGGTTGCCGGTTCTATCTTTGATTCTAATTCCACAGG
TCCAGCTAGACTTATCCAGCAGGGAGCGAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCATAGTG
TTCAATATACTGAACCCTTATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

53.979

96.333

0.52
  dprA Lactococcus lactis subsp. cremoris KW2

39.655

96.667

0.383

Multiple sequence alignment