Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C5695_RS07265 Genome accession   NZ_CP027116
Coordinates   1428820..1429098 (+) Length   92 a.a.
NCBI ID   WP_008345129.1    Uniprot ID   A0AAD0MKH3
Organism   Bacillus pumilus strain 145     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1423820..1434098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS07245 (C5695_07250) - 1423912..1424187 (-) 276 WP_117730150.1 hypothetical protein -
  C5695_RS07250 (C5695_07255) - 1424331..1425950 (+) 1620 WP_117730151.1 ATP-binding cassette domain-containing protein -
  C5695_RS07255 (C5695_07260) - 1425990..1427222 (-) 1233 WP_117730152.1 aminopeptidase -
  C5695_RS20460 - 1427330..1427461 (-) 132 WP_003210922.1 protein YkpC -
  C5695_RS07260 (C5695_07265) mreBH 1427536..1428543 (-) 1008 WP_117730153.1 rod-share determining protein MreBH -
  C5695_RS07265 (C5695_07270) abrB 1428820..1429098 (+) 279 WP_008345129.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  C5695_RS07270 (C5695_07275) - 1429243..1430553 (+) 1311 WP_117730154.1 ATP-binding protein -
  C5695_RS07275 (C5695_07280) - 1430556..1431392 (+) 837 WP_117730155.1 gamma-glutamylcyclotransferase family protein -
  C5695_RS07280 (C5695_07285) - 1431430..1432098 (+) 669 WP_117730156.1 TrkA family potassium uptake protein -
  C5695_RS07285 (C5695_07290) ade 1432362..1434092 (+) 1731 WP_117730157.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10320.00 Da        Isoelectric Point: 4.5447

>NTDB_id=275050 C5695_RS07265 WP_008345129.1 1428820..1429098(+) (abrB) [Bacillus pumilus strain 145]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=275050 C5695_RS07265 WP_008345129.1 1428820..1429098(+) (abrB) [Bacillus pumilus strain 145]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCGATCGAATTAAGAAGAGCACTTGA
TATTGCGATTAAAGACAGTATGGAATTTTTTATAGATGGAGAGAAAATCGTCTTGAAAAAATATCAGCCAGAGGGTGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGTTAAAAGAACTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554

Multiple sequence alignment