Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   C5695_RS07045 Genome accession   NZ_CP027116
Coordinates   1390955..1391416 (-) Length   153 a.a.
NCBI ID   WP_117730119.1    Uniprot ID   A0AAD0HLI0
Organism   Bacillus pumilus strain 145     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385955..1396416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS07025 (C5695_07030) - 1386564..1387448 (+) 885 WP_117730115.1 cation diffusion facilitator family transporter -
  C5695_RS20450 - 1387510..1387662 (-) 153 WP_187441791.1 hypothetical protein -
  C5695_RS07030 (C5695_07035) - 1387964..1388503 (+) 540 WP_117730116.1 RDD family protein -
  C5695_RS07035 (C5695_07040) - 1388628..1389938 (+) 1311 WP_117730117.1 MFS transporter -
  C5695_RS07040 (C5695_07045) - 1390012..1390920 (+) 909 WP_117730118.1 chemotaxis protein -
  C5695_RS07045 (C5695_07050) kre 1390955..1391416 (-) 462 WP_117730119.1 YkyB family protein Regulator
  C5695_RS07050 (C5695_07055) - 1391979..1392194 (-) 216 WP_117730120.1 hypothetical protein -
  C5695_RS07055 (C5695_07060) - 1392336..1393613 (-) 1278 WP_117730121.1 MFS transporter -
  C5695_RS07060 (C5695_07065) - 1393687..1394184 (-) 498 WP_117730122.1 L,D-transpeptidase family protein -
  C5695_RS07065 (C5695_07070) - 1394340..1395197 (-) 858 WP_117730123.1 metallophosphoesterase -
  C5695_RS07070 (C5695_07075) fadH 1395337..1396101 (+) 765 WP_117730124.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.39 Da        Isoelectric Point: 10.2452

>NTDB_id=275048 C5695_RS07045 WP_117730119.1 1390955..1391416(-) (kre) [Bacillus pumilus strain 145]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQMYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=275048 C5695_RS07045 WP_117730119.1 1390955..1391416(-) (kre) [Bacillus pumilus strain 145]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCTAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAATGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAACCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment