Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   C5695_RS06880 Genome accession   NZ_CP027116
Coordinates   1354121..1356226 (-) Length   701 a.a.
NCBI ID   WP_117730093.1    Uniprot ID   A0AAD0MLE9
Organism   Bacillus pumilus strain 145     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349121..1361226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS06855 (C5695_06860) - 1349509..1349751 (+) 243 WP_117730089.1 aspartyl-phosphate phosphatase Spo0E family protein -
  C5695_RS06860 (C5695_06865) - 1349798..1351303 (-) 1506 WP_117730090.1 ATP-binding protein -
  C5695_RS06865 (C5695_06870) - 1351508..1351963 (+) 456 WP_058337420.1 MarR family transcriptional regulator -
  C5695_RS06870 (C5695_06875) motB 1352192..1352956 (-) 765 WP_117730091.1 flagellar motor protein MotB -
  C5695_RS06875 (C5695_06880) motA 1352949..1353743 (-) 795 WP_117730092.1 flagellar motor stator protein MotA -
  C5695_RS06880 (C5695_06885) clpC 1354121..1356226 (-) 2106 WP_117730093.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  C5695_RS06885 (C5695_06890) - 1356471..1357514 (+) 1044 WP_117730094.1 hypothetical protein -
  C5695_RS06890 (C5695_06895) queC 1357790..1358446 (+) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  C5695_RS06895 (C5695_06900) queD 1358447..1358887 (+) 441 WP_117730095.1 6-carboxytetrahydropterin synthase QueD -
  C5695_RS06900 (C5695_06905) queE 1358880..1359611 (+) 732 WP_117730096.1 7-carboxy-7-deazaguanine synthase QueE -
  C5695_RS06905 (C5695_06910) queF 1359627..1360124 (+) 498 WP_058014145.1 preQ(1) synthase -
  C5695_RS06915 (C5695_06920) - 1360392..1360610 (+) 219 WP_003211069.1 hypothetical protein -
  C5695_RS06920 (C5695_06925) - 1360729..1360917 (-) 189 WP_003211747.1 DUF2187 family protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 77932.54 Da        Isoelectric Point: 5.1732

>NTDB_id=275047 C5695_RS06880 WP_117730093.1 1354121..1356226(-) (clpC) [Bacillus pumilus strain 145]
MRCQHCQENEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEPTGPAQSGKQPTQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQAEAIEILKGIQDKYESYHGVTYSHEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLTQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQSKANDKEHVVTAEDIQAIVEQKTGIPVSKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHIFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSSDKKAVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLNRDDLVKIVDLLLNELSEQLKEQHLTVQV
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVVDNEIVVKKG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=275047 C5695_RS06880 WP_117730093.1 1354121..1356226(-) (clpC) [Bacillus pumilus strain 145]
ATGCGTTGTCAACATTGTCAAGAAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCATCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGAGGAAGTTCAT
TCTTCTCTGAACCAACAGGACCTGCACAAAGCGGAAAGCAGCCAACACAAAAAGGCTTACTCGATGAACTTGGCCGAAAT
TTAACAGATGGCGCTAATGCTGGTCTCATTGATCCAGTCATCGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCAGTCCTCATTGGTGAACCAGGCGTTGGGAAAACAGCAATTGCTGAAGGACTCGCAC
TGAAAATTGCAAGCGGCGATGTACCAAATAAATTAAAGAACAAACAGATTTATTTATTAGATGTCTCTTCACTTGTAGCG
AATACAGGCGTACGTGGTCAATTCGAGGAAAGAATGAAACAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATTATTTT
ATTTGTAGATGAAATCCACCTGCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCTCTT
GAACGACGCTTTCAGCCCGTTATTGTAGATGAACCAACACAAGCTGAAGCGATCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAAGCTATCATGGCGTCACCTACTCTCATGAAGCCATTCAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGTCATCTACCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTTTCCATTGATGCAGCAAGT
GAAGATGAACTAACGAACCGCCTTACACAAATCGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCAAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAGCAAAGCAAATGACAAAGAACATGTCGTCACAG
CAGAGGACATTCAAGCCATTGTGGAACAAAAAACAGGTATCCCTGTTAGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGCTTAAAAGCACGTGTGATCGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCTGTGAAAAG
AAGCAGAGCCGGCTTAAAATCAAAGCATAGACCGACAGGCTCCTTTCTTTTCGTTGGACCAACAGGAGTCGGAAAAACCG
AATTGTCAAAAACATTAGCTGAAGAATTATTCGGCTCAAGAGATGCGATTATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCCAAACTGATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCGGGTCAGCTGACAGAAAAAGT
GCGGAGAAAGCCGTATAGCATCATCTTGCTGGATGAAATTGAAAAAGCACATCCTGATGTGCAGCACATATTCCTTCAAA
TCATGGAAGATGGTCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACTGTCATCATCATGACAAGTAAC
GCAGGCAGCTCAGATAAAAAAGCAGTCAAAGTCGGCTTCCAGTCTGATCAAGAAGAAGCGATTGAAGAACAATCACTCAT
TGATTCACTCAGCGCCTATTTCAAACCCGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAAATAGAG
ATGATTTAGTGAAGATTGTGGATCTTCTGCTTAATGAGCTGTCAGAGCAATTAAAAGAACAACATTTAACAGTCCAAGTA
ACAAATGAAGCGAAAGAAAAAATCGCAGAACTTGGATATCACCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCATTCA
AGAGCACGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAACTTTCAGGATTCACTGTAGATGTAGTAGATA
ATGAAATCGTGGTGAAAAAAGGATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-686)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-605)

AAA lid domain (AAA_lid_9)

(254-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.275

100

0.595
  clpE Streptococcus mutans UA159

57.676

100

0.595
  clpE Streptococcus pneumoniae Rx1

55.034

100

0.569
  clpE Streptococcus pneumoniae D39

55.034

100

0.569
  clpE Streptococcus pneumoniae R6

55.034

100

0.569
  clpE Streptococcus pneumoniae TIGR4

55.034

100

0.569
  clpC Bacillus subtilis subsp. subtilis str. 168

54.03

95.578

0.516
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.687

92.582

0.432
  clpC Streptococcus thermophilus LMD-9

44.954

93.295

0.419
  clpC Streptococcus thermophilus LMG 18311

44.648

93.295

0.417
  clpC Streptococcus mutans UA159

43.865

93.01

0.408
  clpC Streptococcus pneumoniae TIGR4

44.462

91.441

0.407
  clpC Streptococcus pneumoniae Rx1

44.654

90.728

0.405
  clpC Streptococcus pneumoniae D39

44.654

90.728

0.405

Multiple sequence alignment