Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   C5695_RS04095 Genome accession   NZ_CP027116
Coordinates   858255..859046 (+) Length   263 a.a.
NCBI ID   WP_117729444.1    Uniprot ID   A0AAD0HL86
Organism   Bacillus pumilus strain 145     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 853255..864046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS04060 (C5695_04055) - 853343..853891 (+) 549 WP_117729431.1 thioredoxin family protein -
  C5695_RS04065 (C5695_04060) - 854228..854695 (+) 468 WP_117729433.1 DUF393 domain-containing protein -
  C5695_RS04070 (C5695_04065) - 854732..855988 (-) 1257 WP_117729435.1 helix-turn-helix transcriptional regulator -
  C5695_RS04075 (C5695_04075) - 856261..856848 (+) 588 WP_187441900.1 nitroreductase -
  C5695_RS04080 (C5695_04080) - 856884..857039 (-) 156 WP_012009317.1 YfhD family protein -
  C5695_RS04085 (C5695_04085) - 857101..857211 (-) 111 WP_017358836.1 YfhE family protein -
  C5695_RS04090 (C5695_04090) - 857264..858160 (-) 897 WP_117729442.1 TIGR01777 family oxidoreductase -
  C5695_RS04095 (C5695_04095) recX 858255..859046 (+) 792 WP_117729444.1 recombination regulator RecX Regulator
  C5695_RS04100 (C5695_04100) - 859050..859364 (+) 315 WP_117729446.1 YfhH family protein -
  C5695_RS04105 (C5695_04105) - 859387..859560 (-) 174 WP_003217811.1 YpzG family protein -
  C5695_RS04110 (C5695_04110) - 859586..859735 (-) 150 WP_117729448.1 small, acid-soluble spore protein K -
  C5695_RS04115 (C5695_04115) - 859852..860124 (+) 273 WP_106051563.1 YfhJ family protein -
  C5695_RS04120 (C5695_04120) - 860416..861399 (+) 984 WP_117729450.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30639.12 Da        Isoelectric Point: 6.6687

>NTDB_id=275033 C5695_RS04095 WP_117729444.1 858255..859046(+) (recX) [Bacillus pumilus strain 145]
MPYITKISAQKKNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIEIQFGDAVKKGFHQAVDYLSYRMRSVKEV
ADYLTKKEIPAPAISEIIHKLKDYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDTIEQALSQYPDDLQLEE
AVKQVQKLVRKEKNRSAKEIEQRIKLQLQRKGFSFEMIDKALQEAYDGQEEEKEEEALLYMMEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDAIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=275033 C5695_RS04095 WP_117729444.1 858255..859046(+) (recX) [Bacillus pumilus strain 145]
ATGCCTTATATTACAAAAATCTCCGCTCAGAAAAAAAATACGGAGCGAGTGAACATTTTTCTTGATGAAAAGTACGCCTT
TAGCGTTGATCTAGATGTGCTCGTTCAGCACGATTTGAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATTGAAATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCACCAGGCTGTCGATTATTTATCCTACCGGATGAGATCAGTAAAAGAAGTG
GCTGATTATTTGACGAAAAAAGAAATTCCAGCACCTGCTATTAGTGAAATTATACACAAATTAAAGGATTACAAGTATGT
AAACGATCTTGAATTTGCGGAAGCCTATGTAAGCACCCATCGTAAAACGAATAGTAAAGGGCCGTCCGTCCTCAAAAAAG
AGCTAAAGCTTAAAGGGATAGACGATGACACCATTGAACAAGCCCTATCGCAATACCCTGATGATTTACAGCTGGAGGAA
GCTGTGAAGCAGGTCCAGAAGCTTGTGAGAAAAGAAAAAAATCGTTCCGCAAAAGAGATCGAGCAGCGCATCAAGCTGCA
GCTACAACGAAAGGGATTTTCGTTTGAGATGATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTCCTCTATATGATGGAGAAGGCAAAACGCAAGGTAGGATATGACGGCTCATTTGAAAAGAAGATGAAA
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTTGACGCAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

64.259

100

0.643

Multiple sequence alignment