Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C5695_RS01920 Genome accession   NZ_CP027116
Coordinates   360173..360601 (-) Length   142 a.a.
NCBI ID   WP_117728666.1    Uniprot ID   A0AAD0ML74
Organism   Bacillus pumilus strain 145     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 355173..365601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS01890 (C5695_01890) - 355327..355650 (+) 324 WP_117732975.1 YckD family protein -
  C5695_RS01895 (C5695_01895) - 355696..356472 (-) 777 WP_117728655.1 MBL fold metallo-hydrolase -
  C5695_RS01900 (C5695_01900) - 356588..357004 (+) 417 WP_187441372.1 Lrp/AsnC family transcriptional regulator -
  C5695_RS01905 (C5695_01905) - 357033..357839 (+) 807 WP_117728660.1 AAC(3) family N-acetyltransferase -
  C5695_RS01910 (C5695_01910) - 357841..358227 (-) 387 WP_117728662.1 competence protein ComJ -
  C5695_RS01915 (C5695_01915) - 358348..360006 (-) 1659 WP_272866846.1 methyl-accepting chemotaxis protein -
  C5695_RS01920 (C5695_01920) nucA/comI 360173..360601 (-) 429 WP_117728666.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  C5695_RS01930 (C5695_01930) - 360969..363037 (+) 2069 Protein_347 hydantoinase/oxoprolinase family protein -
  C5695_RS01935 (C5695_01935) - 363027..365012 (+) 1986 WP_117728670.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15890.82 Da        Isoelectric Point: 5.5857

>NTDB_id=275031 C5695_RS01920 WP_117728666.1 360173..360601(-) (nucA/comI) [Bacillus pumilus strain 145]
MKLLKIILLLLLIVVGVATGYIQLEQNKQESANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQRDQS
LRGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVSHQLSDDPDGTKIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=275031 C5695_RS01920 WP_117728666.1 360173..360601(-) (nucA/comI) [Bacillus pumilus strain 145]
ATGAAACTTCTTAAAATCATTCTTTTGCTTTTATTGATTGTCGTTGGTGTAGCGACAGGCTATATTCAGCTGGAGCAAAA
TAAACAAGAGAGTGCGAATTCATCTTATGACAAAACCATTCACTTTCCATCAGATCGTTACCCCGAAACTGCAAAGCACA
TAGAAGAGGCAATTGATGAAGGTCATTCATCCGTTTGTACAATTGACCGTAAACACAGCGATGAGCAGAGAGATCAATCA
CTACGCGGCATCCCAACAAAGCGCGGGTATGACCGAGATGAGTGGCCGATGGCGATGTGTAAAGAAGGAGGAACAGGAGC
TTCTGTCAAATATATTAGCCCTTCAGATAACAGAGGAGCCGGCTCTTGGGTTAGTCATCAATTATCAGATGACCCTGATG
GTACAAAAATTCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.949

83.099

0.556

Multiple sequence alignment