Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C5695_RS00255 Genome accession   NZ_CP027116
Coordinates   47053..47343 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain 145     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42053..52343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS00215 (C5695_00215) - 42083..42412 (+) 330 WP_117732951.1 cyclic-di-AMP receptor -
  C5695_RS00220 (C5695_00220) - 42425..42865 (+) 441 WP_117728147.1 YaaR family protein -
  C5695_RS00225 (C5695_00225) holB 42877..43866 (+) 990 WP_117728150.1 DNA polymerase III subunit delta' -
  C5695_RS00230 (C5695_00230) - 43869..44696 (+) 828 WP_024425628.1 stage 0 sporulation family protein -
  C5695_RS00235 (C5695_00235) yabA 44711..45064 (+) 354 WP_117728152.1 DNA replication initiation control protein YabA -
  C5695_RS00240 (C5695_00240) - 45120..45863 (+) 744 WP_117728154.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  C5695_RS00245 (C5695_00245) - 45850..46152 (+) 303 WP_117728156.1 GIY-YIG nuclease family protein -
  C5695_RS00250 (C5695_00250) rsmI 46130..47008 (+) 879 WP_117728158.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  C5695_RS00255 (C5695_00255) abrB 47053..47343 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  C5695_RS00260 (C5695_00260) metG 47864..49864 (+) 2001 WP_117728160.1 methionine--tRNA ligase -
  C5695_RS00265 (C5695_00265) - 49948..50715 (+) 768 WP_117728162.1 TatD family hydrolase -
  C5695_RS00270 (C5695_00270) - 50960..52162 (+) 1203 WP_117728165.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=275028 C5695_RS00255 WP_087975202.1 47053..47343(-) (abrB) [Bacillus pumilus strain 145]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=275028 C5695_RS00255 WP_087975202.1 47053..47343(-) (abrB) [Bacillus pumilus strain 145]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment