Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C5695_RS00020 Genome accession   NZ_CP027116
Coordinates   3056..4168 (+) Length   370 a.a.
NCBI ID   WP_117728103.1    Uniprot ID   A0AAD0HJC6
Organism   Bacillus pumilus strain 145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS00005 (C5695_00005) dnaA 1..1341 (+) 1341 WP_117728097.1 chromosomal replication initiator protein DnaA -
  C5695_RS00010 (C5695_00010) dnaN 1537..2673 (+) 1137 WP_117728099.1 DNA polymerase III subunit beta -
  C5695_RS00015 (C5695_00015) yaaA 2824..3039 (+) 216 WP_117728101.1 S4 domain-containing protein YaaA -
  C5695_RS00020 (C5695_00020) recF 3056..4168 (+) 1113 WP_117728103.1 DNA replication/repair protein RecF Machinery gene
  C5695_RS00025 (C5695_00025) - 4186..4431 (+) 246 WP_117728105.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  C5695_RS00030 (C5695_00030) gyrB 4489..6405 (+) 1917 WP_117732949.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  C5695_RS00035 (C5695_00035) gyrA 6636..9140 (+) 2505 WP_117728107.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42602.66 Da        Isoelectric Point: 6.9448

>NTDB_id=275026 C5695_RS00020 WP_117728103.1 3056..4168(+) (recF) [Bacillus pumilus strain 145]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLIFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREVDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHDTLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=275026 C5695_RS00020 WP_117728103.1 3056..4168(+) (recF) [Bacillus pumilus strain 145]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCATATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGCTAAACACCATTATGTTTGCACCAGAGGACTTGAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAGACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTTAAAAGACGACTGATTTTTACGAAACAGCTCGAAAAATGGGCACAGCCGTTGCATTTTGGGA
TATCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAGTAGACCGAGGTGTGACACTGTGGGGACCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGTGATGTTCAGACATATGGATCTCAAGGGCAACAAAGAACAACAGCTCTTT
CACTAAAGCTTGCAGAAATTGATTTGATACATGAAGAAATCGGTGAATATCCCATTCTTCTACTAGATGATGTTTTATCT
GAACTAGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACGAGTGT
TGAAGGCATCGATCATGACACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83

Multiple sequence alignment