Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM340_RS06895 Genome accession   NZ_CP032204
Coordinates   1380987..1381463 (-) Length   158 a.a.
NCBI ID   WP_001186792.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1375987..1386463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM340_RS06850 (AM340_06960) setC 1376440..1377624 (-) 1185 WP_001172866.1 sugar efflux transporter -
  AM340_RS06855 (AM340_06965) rhuM 1378053..1378181 (-) 129 Protein_1258 RhuM family protein -
  AM340_RS06865 (AM340_06975) - 1378419..1379261 (-) 843 WP_001290170.1 DUF4942 domain-containing protein -
  AM340_RS06870 (AM340_06980) - 1379346..1379543 (-) 198 WP_087890155.1 DUF957 domain-containing protein -
  AM340_RS06875 (AM340_06985) - 1379619..1379768 (-) 150 Protein_1261 DUF5983 family protein -
  AM340_RS06880 (AM340_06990) - 1379765..1380142 (-) 378 WP_000854823.1 TA system toxin CbtA family protein -
  AM340_RS06885 (AM340_06995) - 1380231..1380599 (-) 369 WP_001285614.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM340_RS06890 (AM340_07000) - 1380679..1380900 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  AM340_RS06895 (AM340_07005) radC 1380987..1381463 (-) 477 WP_001186792.1 RadC family protein Machinery gene
  AM340_RS06900 (AM340_07010) - 1381479..1381958 (-) 480 WP_000706978.1 antirestriction protein -
  AM340_RS06905 (AM340_07015) - 1382224..1383042 (-) 819 WP_001175143.1 DUF932 domain-containing protein -
  AM340_RS06910 (AM340_07020) - 1383132..1383365 (-) 234 WP_000883181.1 DUF905 family protein -
  AM340_RS06915 (AM340_07025) - 1383371..1384048 (-) 678 WP_001097562.1 hypothetical protein -
  AM340_RS06920 (AM340_07030) - 1384199..1384879 (-) 681 WP_001278651.1 WYL domain-containing protein -
  AM340_RS06925 (AM340_07035) - 1385082..1385966 (-) 885 WP_001116795.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17672.38 Da        Isoelectric Point: 8.7161

>NTDB_id=275015 AM340_RS06895 WP_001186792.1 1380987..1381463(-) (radC) [Escherichia coli strain AR_0013]
MQQLSFLPVAMTPGERSLIQRALKTLNRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=275015 AM340_RS06895 WP_001186792.1 1380987..1381463(-) (radC) [Escherichia coli strain AR_0013]
ATGCAACAGCTTTCCTTTCTGCCCGTAGCGATGACGCCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGAA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATACTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment