Detailed information NTG0274954

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM465_RS10660
• Genome accession: NZ_CP032201
• Coordinates: 2085772..2086764 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0086
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2080772..2091764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM465_RS10630 (AM465_10765)	ispD	2080833..2081543 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AM465_RS10635 (AM465_10770)	ispF	2081543..2082022 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM465_RS10640 (AM465_10775)	truD	2082019..2083068 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
AM465_RS10645 (AM465_10780)	surE	2083049..2083810 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM465_RS10650 (AM465_10785)	pcm	2083804..2084430 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM465_RS10655 (AM465_10790)	nlpD	2084615..2085709 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
AM465_RS10660 (AM465_10795)	rpoS	2085772..2086764 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM465_RS10665 (AM465_10800)	-	2086935..2087486 (-)	552	WP_001179444.1	flavodoxin family protein	-
AM465_RS10670 (AM465_10805)	-	2087711..2088754 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
AM465_RS10675 (AM465_10810)	ygbN	2088897..2090261 (-)	1365	WP_000104433.1	GntP family transporter	-
AM465_RS10680 (AM465_10815)	ygbM	2090350..2091126 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=274954 AM465_RS10660 WP_000081550.1 2085772..2086764(+) (rpoS) [Escherichia coli strain AR_0086]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=274954 AM465_RS10660 WP_000081550.1 2085772..2086764(+) (rpoS) [Escherichia coli strain AR_0086]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715