Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM465_RS01070 Genome accession   NZ_CP032201
Coordinates   184790..185266 (-) Length   158 a.a.
NCBI ID   WP_059333688.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0086     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 179790..190266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM465_RS28580 - 181903..182208 (-) 306 Protein_188 helix-turn-helix domain-containing protein -
  AM465_RS28660 (AM465_01040) - 182471..182605 (-) 135 Protein_189 transcriptional regulator -
  AM465_RS27755 - 182575..182724 (-) 150 Protein_190 hypothetical protein -
  AM465_RS01045 (AM465_01045) - 182830..183006 (-) 177 WP_000839286.1 DUF957 domain-containing protein -
  AM465_RS01050 (AM465_01050) - 183023..183511 (-) 489 WP_000761690.1 DUF5983 family protein -
  AM465_RS01055 (AM465_01055) - 183508..183885 (-) 378 WP_000854759.1 TA system toxin CbtA family protein -
  AM465_RS01060 (AM465_01060) - 183975..184343 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM465_RS01065 (AM465_01065) - 184506..184727 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  AM465_RS01070 (AM465_01070) radC 184790..185266 (-) 477 WP_059333688.1 RadC family protein Machinery gene
  AM465_RS01075 (AM465_01075) - 185282..185755 (-) 474 WP_001542276.1 antirestriction protein -
  AM465_RS01085 (AM465_01085) - 186096..186833 (-) 738 Protein_198 DUF932 domain-containing protein -
  AM465_RS01090 (AM465_01090) istB 186919..187665 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  AM465_RS01095 (AM465_01095) istA 187680..189221 (-) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  AM465_RS27760 - 189393..189500 (-) 108 Protein_201 DUF945 domain-containing protein -
  AM465_RS01105 (AM465_01105) - 189618..189813 (-) 196 Protein_202 DUF905 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17790.43 Da        Isoelectric Point: 7.5719

>NTDB_id=274909 AM465_RS01070 WP_059333688.1 184790..185266(-) (radC) [Escherichia coli strain AR_0086]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274909 AM465_RS01070 WP_059333688.1 184790..185266(-) (radC) [Escherichia coli strain AR_0086]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399