Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   D2M30_RS19940 Genome accession   NZ_CP032146
Coordinates   3920782..3921576 (-) Length   264 a.a.
NCBI ID   WP_013354215.1    Uniprot ID   A0A9P1JLP7
Organism   Bacillus amyloliquefaciens strain YP6     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3915782..3926576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS19920 (D2M30_19945) - 3915906..3917324 (-) 1419 WP_125123524.1 cell wall metabolism sensor histidine kinase WalK -
  D2M30_RS19925 (D2M30_19950) - 3917321..3918004 (-) 684 WP_013354212.1 response regulator transcription factor -
  D2M30_RS19930 (D2M30_19955) - 3918218..3919129 (+) 912 WP_125123525.1 PepSY domain-containing protein -
  D2M30_RS19935 (D2M30_19960) htrA 3919499..3920695 (-) 1197 WP_088613772.1 S1C family serine protease Regulator
  D2M30_RS19940 (D2M30_19965) vicX 3920782..3921576 (-) 795 WP_013354215.1 MBL fold metallo-hydrolase Regulator
  D2M30_RS19945 (D2M30_19970) - 3921592..3922431 (-) 840 WP_014472401.1 two-component system regulatory protein YycI -
  D2M30_RS19950 (D2M30_19975) yycH 3922418..3923776 (-) 1359 WP_088613773.1 two-component system activity regulator YycH -
  D2M30_RS19955 (D2M30_19980) walK 3923766..3925601 (-) 1836 WP_014471295.1 cell wall metabolism sensor histidine kinase WalK -
  D2M30_RS19960 (D2M30_19985) walR 3925608..3926315 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29116.16 Da        Isoelectric Point: 5.7992

>NTDB_id=274902 D2M30_RS19940 WP_013354215.1 3920782..3921576(-) (vicX) [Bacillus amyloliquefaciens strain YP6]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEQIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=274902 D2M30_RS19940 WP_013354215.1 3920782..3921576(-) (vicX) [Bacillus amyloliquefaciens strain YP6]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCCTTTCT
GGTGGATGCCGGCCTGAGCGGAAAAGCGATGGACGGGCTGATGGAGCAAATCGGCCGTAAGATAGACGACGTGGACGGCA
TCTTTGTCACTCATGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCGGTATACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGACACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTCTATGTTTTCC
ATTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGTTATGTGAGCGACAGAATGAAGGGCATTATCCGTTCGGCC
AATGTCTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAACGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCAAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTACTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCGGGGGAAACGTTTCAATTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JLP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527