Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   D2M30_RS19600 Genome accession   NZ_CP032146
Coordinates   3846831..3847520 (-) Length   229 a.a.
NCBI ID   WP_125123495.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3841831..3852520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS19580 (D2M30_19605) - 3842735..3843082 (-) 348 WP_125123492.1 YxeA family protein -
  D2M30_RS19585 (D2M30_19610) yxdM 3843096..3844964 (-) 1869 WP_125123493.1 ABC transporter permease YxdM -
  D2M30_RS19590 (D2M30_19615) yxdL 3844939..3845712 (-) 774 WP_013354150.1 ABC transporter ATP-binding protein YxdL -
  D2M30_RS19595 (D2M30_19620) yxdK 3845857..3846834 (-) 978 WP_125123494.1 two-component system sensor histidine kinase YxdK -
  D2M30_RS19600 (D2M30_19625) braR 3846831..3847520 (-) 690 WP_125123495.1 two-component system response regulator YxdJ Regulator
  D2M30_RS19605 (D2M30_19630) fba 3847628..3848500 (-) 873 WP_125123496.1 class II fructose-1,6-bisphosphate aldolase -
  D2M30_RS19610 (D2M30_19635) iolI 3848503..3849345 (-) 843 WP_065982734.1 2-keto-myo-inositol isomerase -
  D2M30_RS19615 (D2M30_19640) - 3849433..3850302 (-) 870 WP_088613729.1 sugar phosphate isomerase/epimerase family protein -
  D2M30_RS19620 (D2M30_19645) - 3850322..3851356 (-) 1035 WP_125123497.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26587.38 Da        Isoelectric Point: 4.9648

>NTDB_id=274898 D2M30_RS19600 WP_125123495.1 3846831..3847520(-) (braR) [Bacillus amyloliquefaciens strain YP6]
MNKIMIVEDSEDIRGLLRNYLEKYGYQTVAAVDFTAVLDVFLKEKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVLEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=274898 D2M30_RS19600 WP_125123495.1 3846831..3847520(-) (braR) [Bacillus amyloliquefaciens strain YP6]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCGGAATTATCTTGAAAAATACGGATATCA
AACCGTGGCGGCCGTGGATTTTACGGCTGTTCTTGATGTTTTTTTAAAAGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCCTATGACGGCTATTATTGGTGCCGCCAGATCCGTCAGCACTCCACAAGCCCGATCATTTTTATTTCAGCC
AGAAGCGGAGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGCGAGAAAGTGCTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTCTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
TATTTTCGTCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTAT
CAATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393