Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D2M30_RS18210 Genome accession   NZ_CP032146
Coordinates   3571252..3572382 (-) Length   376 a.a.
NCBI ID   WP_014471144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3566252..3577382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS18175 (D2M30_18205) - 3566390..3567031 (-) 642 WP_125123374.1 NAD(P)-dependent oxidoreductase -
  D2M30_RS18180 (D2M30_18210) - 3567096..3567500 (-) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  D2M30_RS18185 (D2M30_18215) ureC 3567642..3569351 (-) 1710 WP_088613593.1 urease subunit alpha -
  D2M30_RS18190 (D2M30_18220) ureB 3569348..3569722 (-) 375 WP_013353895.1 urease subunit beta -
  D2M30_RS18195 (D2M30_18225) ureA 3569719..3570036 (-) 318 WP_125123375.1 urease subunit gamma -
  D2M30_RS18200 (D2M30_18230) - 3570388..3570576 (-) 189 WP_014472339.1 CsbD family protein -
  D2M30_RS18205 (D2M30_18235) - 3570650..3571129 (-) 480 WP_088613594.1 hypothetical protein -
  D2M30_RS18210 (D2M30_18240) rapC 3571252..3572382 (-) 1131 WP_014471144.1 tetratricopeptide repeat protein Regulator
  D2M30_RS18215 (D2M30_18245) moaA 3572573..3573598 (-) 1026 WP_014471145.1 GTP 3',8-cyclase MoaA -
  D2M30_RS18220 (D2M30_18250) fdhD 3573616..3574404 (-) 789 WP_065522408.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  D2M30_RS20715 (D2M30_3850) - 3574499..3574663 (-) 165 WP_088613596.1 hypothetical protein -
  D2M30_RS18225 (D2M30_18255) - 3574750..3575430 (-) 681 WP_014471147.1 VWA domain-containing protein -
  D2M30_RS18230 (D2M30_18260) - 3575740..3576429 (-) 690 WP_013353901.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44906.03 Da        Isoelectric Point: 5.4460

>NTDB_id=274893 D2M30_RS18210 WP_014471144.1 3571252..3572382(-) (rapC) [Bacillus amyloliquefaciens strain YP6]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPDFTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDQNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYVKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDEAALAYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNKKSLYVYIEDFALEAAIYTSAHKQYKEAAYFYEQAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=274893 D2M30_RS18210 WP_014471144.1 3571252..3572382(-) (rapC) [Bacillus amyloliquefaciens strain YP6]
ATGACCGCATACGAGATTCCGTCATCTCAGGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGGATGGAGGAAGACCAGCTGCTGCTGCTGTATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGATTTTACCGAACAATCACAAATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCAGAATAACTATGTTGCAGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAACAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACATACGTAAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATTTC
AGGAAACTATATCGACTGCAAAAACTACGACAAAGCGCTCGAGCATTTAGATGAAGCGCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGTTACTTTAGAAAAGCGGTTCCCGTTTTTGAGGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTCTTCAGCTTAACACA
CACCCTTTTCAGGCTGCATGATGACGAAGCGGCCCTTGCCTATTATGAAAGAGGGGTTATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAATATAAGTTTTTACAAGCGCTTTATCTGGAATCCCTCAATATGGACTTAATCCACGAAGTG
TTTGATTATATGAATAAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCATTTACACAAGCGCCCA
TAAGCAATATAAAGAAGCGGCGTATTTTTATGAACAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAATGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.431
  rapF Bacillus subtilis subsp. subtilis str. 168

40.267

99.734

0.402