Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   D2M30_RS16590 Genome accession   NZ_CP032146
Coordinates   3254253..3256568 (-) Length   771 a.a.
NCBI ID   WP_125123236.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3249253..3261568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS16580 (D2M30_16605) cysI 3250527..3252242 (-) 1716 WP_125123234.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  D2M30_RS16585 (D2M30_16610) - 3252270..3254078 (-) 1809 WP_125123235.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  D2M30_RS16590 (D2M30_16615) helD 3254253..3256568 (-) 2316 WP_125123236.1 RNA polymerase recycling motor HelD Machinery gene
  D2M30_RS16595 (D2M30_16620) - 3256737..3257345 (-) 609 WP_014472264.1 trimeric intracellular cation channel family protein -
  D2M30_RS16600 (D2M30_16625) - 3257568..3258368 (+) 801 WP_014471014.1 zinc-dependent metalloprotease -
  D2M30_RS16605 (D2M30_16630) - 3258402..3258821 (-) 420 WP_014471015.1 disulfide oxidoreductase -
  D2M30_RS16610 (D2M30_16635) - 3258811..3259482 (-) 672 WP_014471016.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 88468.73 Da        Isoelectric Point: 6.8327

>NTDB_id=274881 D2M30_RS16590 WP_125123236.1 3254253..3256568(-) (helD) [Bacillus amyloliquefaciens strain YP6]
MAKRDEEWKEEQGRINFVMKELDQKETRLEASSGGLKQDIVGLRKTFWDDVTVNLDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKASPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSEHSGRHMKNIVSTIQKEQNEIIRDEKSKFLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIARRLGRKFDCESPYKQLEYCLTE
QNQDALSVRLTAIAYKASSAFRTMIDRYAGSLSVSGLMCKQISFRGEILISKERIEDYFYSLDQQLPIPNRAELTAEWLL
AEVSALEKKERKKEWVLQESELLDKEDYAQVYQKLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRQLGFLDI
KRMYLRLFSDWGSYETPDQWQSIGALTRKAFAEQSLPYEDAAPYLYLQDLIEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLDDGDDIEPFNRNGEKPRLL
RADTEKARQEQLTETIRELRKKGWETIAVICKTAAEAKKVFQAVSFASDVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IVADASVTQYKSRHDRKLLYTACTRAMHHLTVLYPGETSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=274881 D2M30_RS16590 WP_125123236.1 3254253..3256568(-) (helD) [Bacillus amyloliquefaciens strain YP6]
ATGGCAAAACGTGATGAAGAATGGAAAGAAGAGCAGGGACGAATCAATTTTGTAATGAAAGAACTGGATCAGAAAGAAAC
GCGTCTTGAAGCATCATCGGGCGGATTGAAGCAGGATATTGTCGGCCTGAGAAAAACGTTCTGGGATGATGTCACCGTGA
ATTTGGATGACGCCCATGAAGCGGCGGAAACATTTTCAAGCATCAAACAGCAGGCGGAAATGCTTTCAGAGCGTGAACGG
ACGCATCGGCTTCAATATCGGCAGCTTCAAAAAATCCAAAAGCTGAAAGCCTCTCCCTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAATCTTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGACGAAAACAATGAGCAATTTCTCA
TTTACGATTGGCGGGCGCCCATCTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTACGAAGTTCCGGAAGAA
ACCATAGAAGGCGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTCAACACGGATAT
GACGATTGGTGACGAGATGCTGCAAGAGGTGCTGAGCGAACATTCCGGCCGGCATATGAAAAATATCGTGTCAACCATAC
AAAAAGAACAGAATGAAATCATCCGGGATGAAAAAAGCAAATTTCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTATTTGCTGTACCGGGGGCGCGGTGTGCTTGATGCCCGTCAGATTGTGCTGTTTTC
TCCGAACATTTTGTTCAATAGTTACGTTTCCGCCGTATTGCCGGAACTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCGCCCGCCGGCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACAAGCAGCTCGAATATTGCCTGACTGAG
CAAAATCAGGACGCGCTTTCCGTAAGGCTCACAGCCATCGCCTACAAAGCGTCATCAGCTTTCCGGACCATGATTGACCG
TTACGCCGGATCGCTTTCCGTCTCCGGCCTGATGTGTAAACAGATCAGCTTCCGGGGAGAAATACTGATTTCAAAAGAGC
GGATTGAAGATTACTTTTACTCACTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTC
GCGGAAGTCAGCGCACTCGAAAAAAAGGAACGTAAGAAGGAATGGGTTCTGCAGGAGAGTGAGCTGCTCGATAAGGAAGA
CTATGCTCAAGTTTATCAAAAACTCAAGAAGCAAGCGGCGGATGATGAACCTGCTTTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATCATTGTGGGAAAAGCTTTTAAGCCGATTAAGCAGGCCGTCAGACAGCTTGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGATCATATGAAACGCCTGATCAATGGCAGAGCATCGGCGCTTTGAC
CCGGAAAGCGTTCGCAGAGCAGTCACTCCCTTATGAAGATGCAGCTCCGTATCTTTATTTGCAGGATCTAATAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTATTCATTGATGAAGCGCAGGATTATTCTCCATTTCAGCTGACGTATATTCAA
AGCATCTTCCCAGCCGCGAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCACACCATCACAGGCCCTTC
TTCACTTGCCGGCTGCTTTCGCAATGGCGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACAAAAGCGCTGCTCGATGACGGTGATGACATTGAGCCTTTTAACCGGAACGGAGAAAAACCGCGTCTCCTG
CGGGCGGATACAGAAAAAGCGCGGCAGGAGCAATTGACGGAAACAATACGGGAGCTCAGGAAAAAAGGCTGGGAGACGAT
CGCCGTCATCTGCAAAACTGCCGCGGAAGCAAAAAAAGTATTTCAGGCGGTCAGCTTCGCAAGCGATGTCCGTTTGATCA
ATAAAGAAAATCAGCCTTTCCAAAAAGGGGTATGCGTCATTCCCGTGTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGTCGCTGACGCCTCTGTTACTCAATACAAAAGCCGGCATGACCGCAAGCTGTTATATACGGCCTGCACGCGGGCGAT
GCATCATCTGACCGTGCTGTATCCCGGAGAAACTTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

AAA domain (AAA_19)

(217-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.883

99.87

0.668

Multiple sequence alignment