Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   D2M30_RS14985 Genome accession   NZ_CP032146
Coordinates   2962598..2963293 (-) Length   231 a.a.
NCBI ID   WP_125123121.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2957598..2968293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS14965 (D2M30_14980) - 2957979..2958698 (-) 720 WP_125123118.1 TIGR02206 family membrane protein -
  D2M30_RS14970 (D2M30_14985) - 2958805..2960745 (-) 1941 WP_125123119.1 ABC transporter permease -
  D2M30_RS14975 (D2M30_14990) - 2960742..2961497 (-) 756 WP_125123120.1 ABC transporter ATP-binding protein -
  D2M30_RS14980 (D2M30_14995) - 2961601..2962605 (-) 1005 WP_071347790.1 HAMP domain-containing sensor histidine kinase -
  D2M30_RS14985 (D2M30_15000) braR 2962598..2963293 (-) 696 WP_125123121.1 response regulator transcription factor Regulator
  D2M30_RS14990 (D2M30_15005) - 2963361..2964674 (-) 1314 WP_125123122.1 ABC transporter permease -
  D2M30_RS14995 (D2M30_15010) - 2964664..2965359 (-) 696 WP_125123123.1 ABC transporter ATP-binding protein -
  D2M30_RS15000 (D2M30_15015) - 2965375..2966355 (-) 981 WP_125123644.1 ABC transporter permease -
  D2M30_RS15005 (D2M30_15020) - 2966392..2967375 (-) 984 WP_125123124.1 ABC transporter permease -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26771.90 Da        Isoelectric Point: 6.1583

>NTDB_id=274872 D2M30_RS14985 WP_125123121.1 2962598..2963293(-) (braR) [Bacillus amyloliquefaciens strain YP6]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSQVIREFAEIKPDLVMIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVYQYNAEPALIKRWCGAAIDAETNTVSHENGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=274872 D2M30_RS14985 WP_125123121.1 2962598..2963293(-) (braR) [Bacillus amyloliquefaciens strain YP6]
ATGTTTCATATTTTGTTAATAGAAGATGATAACACTTTGTTTCACGAGATGAAAGAGAGATTAACGGGCTGGTCATTTGC
GGTGCACGGGATAAAGGATTTCAGCCAGGTCATCCGGGAGTTTGCCGAAATCAAGCCTGATTTGGTGATGATTGATGTGC
AGCTGCCGAAATTTGATGGCTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTGTTTTTGTCCTCG
CGGGATCATCCCGCAGATATGGTCATGTCGATGCAGCTCGGAGCAGATGATTTCATTCAGAAGCCTTTTCATTTTGACGT
CTTGATTGCTAAAATACAAGCCGTGTTTCGGCGGGTGTATCAATACAATGCAGAACCGGCGCTCATCAAAAGGTGGTGCG
GGGCTGCCATTGATGCTGAAACAAACACGGTCAGCCATGAAAACGGTTCAGTTGAGCTGACCAAAAACGAAATGCTGATT
TTAAAACTGCTGGCCGAGCAGAAAAATAAAATCGTCAGCCGCGAAGAACTCATCAGAAGCTTGTGGAATGATGAGCGTTT
CGTCAGTGATAACACGCTGACGGTGAATGTCAATCGGCTGCGGAAAAAACTTGATCAATTAGGCATCGGGAAGATGATTG
AAACCAAAGTGGGGCAGGGGTACATCGCGAAGGAAGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.553

94.805

0.394