Detailed information NTG0274859

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: C5O00_RS06320
• Genome accession: NZ_CP027062
• Coordinates: 1427492..1428856 (-)
• Length: 454 a.a.
• NCBI ID: WP_105215917.1
• Uniprot ID: A0A2S0HVU4
• Organism: Pukyongia salina strain RR4-38
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1422492..1433856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5O00_RS06310 (C5O00_06310)	-	1422764..1423801 (+)	1038	WP_105215915.1	NADP(H)-dependent aldo-keto reductase	-
C5O00_RS06315 (C5O00_06315)	-	1423927..1427490 (+)	3564	WP_105215916.1	HYR domain-containing protein	-
C5O00_RS06320 (C5O00_06320)	radA	1427492..1428856 (-)	1365	WP_105215917.1	DNA repair protein RadA	Machinery gene
C5O00_RS06325 (C5O00_06325)	-	1428930..1431923 (+)	2994	WP_105215918.1	ATP-binding protein	-
C5O00_RS06330 (C5O00_06330)	-	1431927..1432568 (+)	642	WP_105215920.1	response regulator transcription factor	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49623.99 Da
• Isoelectric Point: 6.6895

>NTDB_id=274859 C5O00_RS06320 WP_105215917.1 1427492..1428856(-) (radA) [Pukyongia salina strain RR4-38]
MAKTKTTFFCQNCGSQYAKWQGQCTSCKEWNTIAEEVIQKAEKSSWKPEETTGVKRVAKPQKIADISANAEMRMHTANNE
LDRVLGGGLVPGSLTLLGGEPGIGKSTLMLQVALALPYKTLYVSGEESAQQIKMRAERINPGSESCFILTETKTQNIFRQ
IAEIEPDIVVVDSIQTLHTDYIESSAGSISQIRECTAELIKFAKETATPVILIGHITKDGNIAGPKILEHMVDTVLQFEG
DRNHVYRILRANKNRFGSTNELGIYEMQGSGLREVDNPSEILISRNEENLSGTAISATLEGMRPLMIEIQALVSSAVYGT
PQRSATGFNVKRLNMLLAVLEKRAGFKLGAKDVFLNITGGISVDDPAIDLAVIAAVLSSNVDIAIDKTVCFAAEVGLAGE
VRPVTRVEQRIHEAEKLGFGSIVISKYCKLPKDNYTINIIRVSKVNDVVHHLFG

Nucleotide

• Length: 1365 bp

>NTDB_id=274859 C5O00_RS06320 WP_105215917.1 1427492..1428856(-) (radA) [Pukyongia salina strain RR4-38]
ATGGCTAAAACAAAAACAACTTTTTTCTGTCAGAATTGCGGATCTCAATACGCCAAATGGCAGGGGCAATGCACTTCCTG
TAAAGAGTGGAATACCATAGCCGAAGAGGTGATCCAAAAAGCCGAAAAAAGCAGTTGGAAACCAGAAGAAACCACGGGCG
TAAAACGCGTTGCCAAACCCCAGAAAATAGCCGATATTTCAGCGAATGCGGAAATGCGCATGCACACGGCAAACAACGAA
CTTGATCGTGTGCTAGGAGGTGGTCTTGTCCCCGGATCTTTAACACTGCTGGGTGGTGAACCCGGCATTGGTAAAAGCAC
ACTTATGTTACAGGTGGCTTTGGCGTTGCCTTATAAAACGCTATATGTTTCGGGAGAAGAAAGTGCCCAGCAGATTAAAA
TGCGGGCCGAACGTATCAATCCGGGCTCTGAAAGCTGCTTTATTCTTACCGAAACCAAAACTCAAAATATCTTCAGGCAA
ATAGCCGAGATCGAGCCGGATATTGTCGTGGTAGATTCTATCCAAACCCTGCATACAGATTATATAGAAAGTAGTGCCGG
AAGTATTTCACAGATCCGTGAATGTACCGCCGAACTTATAAAATTTGCGAAAGAAACTGCTACCCCTGTGATCCTTATCG
GCCATATTACCAAAGACGGTAATATTGCCGGACCCAAGATCTTAGAGCATATGGTAGATACTGTGCTTCAGTTTGAAGGG
GATAGAAATCACGTTTATCGAATTTTACGCGCCAACAAAAATCGCTTCGGCAGTACCAACGAACTAGGTATTTACGAAAT
GCAGGGAAGTGGCTTAAGGGAGGTAGATAACCCCTCGGAGATCCTTATCTCCAGGAATGAGGAGAATCTAAGCGGGACTG
CAATTTCGGCCACTCTTGAGGGGATGAGGCCGCTCATGATAGAAATTCAGGCTCTTGTAAGTTCGGCAGTATATGGTACC
CCACAGCGATCTGCCACAGGATTCAATGTGAAACGACTTAATATGCTGCTGGCAGTCCTTGAGAAAAGAGCTGGTTTTAA
ATTAGGTGCCAAAGATGTCTTTTTAAATATTACAGGAGGGATCTCGGTGGATGACCCTGCGATCGACCTGGCGGTAATTG
CGGCTGTACTTTCCTCTAACGTGGACATTGCAATTGATAAAACAGTCTGCTTCGCAGCCGAAGTTGGACTTGCAGGAGAA
GTAAGGCCTGTTACCCGTGTGGAACAGCGAATTCATGAAGCTGAAAAGTTAGGCTTCGGAAGCATAGTAATATCAAAATA
CTGTAAACTTCCGAAGGATAACTATACTATCAATATCATTAGGGTTTCCAAAGTGAATGATGTGGTTCATCATCTTTTTG
GGTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (342-426)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

• AAA domain (AAA_25) (80-220)

3D structure

• AlphaFold DB: A0A2S0HVU4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.054	94.053	0.48
radA	Streptococcus pneumoniae Rx1	47.277	100	0.478
radA	Streptococcus pneumoniae D39	47.277	100	0.478
radA	Streptococcus pneumoniae R6	47.277	100	0.478
radA	Streptococcus pneumoniae TIGR4	47.277	100	0.478
radA	Streptococcus mitis NCTC 12261	46.753	100	0.476
radA	Streptococcus mitis SK321	46.753	100	0.476