Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   D2M30_RS11700 Genome accession   NZ_CP032146
Coordinates   2346817..2348307 (-) Length   496 a.a.
NCBI ID   WP_125122909.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2341817..2353307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS11670 (D2M30_11695) gudB 2341892..2343166 (-) 1275 WP_013352705.1 NAD-specific glutamate dehydrogenase -
  D2M30_RS11675 (D2M30_11700) - 2343328..2343912 (-) 585 WP_013352706.1 genetic competence negative regulator -
  D2M30_RS11680 (D2M30_11705) - 2344064..2344852 (-) 789 WP_125122906.1 metallophosphoesterase -
  D2M30_RS11685 (D2M30_11710) - 2344939..2345397 (-) 459 WP_013352708.1 YpbF family protein -
  D2M30_RS11690 (D2M30_11715) - 2345461..2346237 (-) 777 WP_125122907.1 LysM peptidoglycan-binding domain-containing protein -
  D2M30_RS11695 (D2M30_11720) - 2346215..2346802 (-) 588 WP_125122908.1 CPBP family intramembrane glutamic endopeptidase -
  D2M30_RS11700 (D2M30_11725) recS 2346817..2348307 (-) 1491 WP_125122909.1 ATP-dependent DNA helicase RecQ Machinery gene
  D2M30_RS11705 (D2M30_11730) - 2348300..2349358 (-) 1059 WP_125122910.1 helix-turn-helix domain-containing protein -
  D2M30_RS11710 (D2M30_11735) - 2349628..2349876 (+) 249 WP_003153403.1 ferredoxin -
  D2M30_RS11715 (D2M30_11740) - 2350015..2350587 (-) 573 WP_013352713.1 ECF transporter S component -
  D2M30_RS11720 (D2M30_11745) serA 2351077..2352654 (+) 1578 WP_125122911.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56021.06 Da        Isoelectric Point: 5.8246

>NTDB_id=274839 D2M30_RS11700 WP_125122909.1 2346817..2348307(-) (recS) [Bacillus amyloliquefaciens strain YP6]
MTELHKALYRNFGLHSFKKGQEEIITSVLQKKDTIAMLPTGGGKSLCYQLPGYIMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSDERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAIEHVADNAEKISRVTELAEKLEGPGIVYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTSDERKLRDVLISKGVQETQARTAIHLYLQGKTT
KEQLQEELTCRVEKKLLKMNRFSALLERKECIREALLAYFDESYEPEGQTGQCCSSCGIDLAQYEQKGERKNMERFEDWK
LELDRIFGLESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=274839 D2M30_RS11700 WP_125122909.1 2346817..2348307(-) (recS) [Bacillus amyloliquefaciens strain YP6]
ATGACTGAGCTGCACAAAGCTTTATACCGGAATTTTGGTCTGCATTCGTTTAAAAAAGGGCAGGAAGAAATCATCACCAG
CGTGCTTCAAAAGAAGGATACGATTGCCATGCTTCCGACAGGCGGGGGGAAATCATTATGCTATCAGCTTCCGGGTTACA
TAATGGACGGGCTGGTACTGATTATTTCACCTCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAGGCGAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCTGACGAGCGGCATTTTATCCTCAGCAACATCAGCCGTTACAA
ATTTCTTTATATGTCTCCTGAAGCCCTCTCGTCACCTTATGTGCTGAATCGTTTGAAAAACGTCCCGGTCAGTTTATTTG
TCATTGATGAGGCTCATTGCATATCAGAGTGGGGACATGATTTCAGGCCTGATTATTCAAAGCTCGGACCTTTCAGGCAA
GCACTCGGCAAGCCGCCTGTATTGGCGCTGACCGCGACAGCGACGAAAGAAACGCTCAGGGATGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGCCATCTATATTCGGTCAACCGGCCGAATATTCTCTTGGCGATTGAACATGTGGCTGATAATG
CCGAAAAAATCAGCAGGGTCACAGAGCTTGCCGAAAAGCTCGAGGGCCCGGGCATCGTATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCCGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGGGGAATGGATACAGGCGA
CAGGATATTAATTCAGCAGCAATTTATCCATAACCAGCTTGATTGCATTTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCTGATATCCGCTTTGTTATTCATTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGAAGAGCG
GGCCGCGACGGCAGCCCAAGTGTCAGTATTTTGCTGAGAGCGCCGGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGTTTGTCCGATTACGACCTGGAAGGCATTCTGGCCGTCATACGGGACGCCGGTACGAGCGATGAGCGAAAGCTTC
GGGACGTTCTGATAAGCAAGGGCGTTCAGGAAACACAGGCACGAACGGCCATCCACCTGTACCTGCAAGGAAAAACCACT
AAAGAGCAGCTGCAGGAAGAACTGACATGCCGCGTGGAAAAGAAACTGCTTAAAATGAACCGCTTTTCGGCGTTATTGGA
GCGGAAAGAATGTATAAGAGAAGCGCTATTAGCATACTTTGATGAATCGTATGAGCCTGAAGGTCAAACCGGGCAATGCT
GCAGCAGCTGCGGAATTGATCTGGCCCAATACGAGCAAAAAGGAGAACGGAAAAACATGGAGCGGTTTGAAGATTGGAAG
CTGGAATTAGACCGGATTTTCGGTTTAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(216-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

69.355

100

0.694