Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   C5I45_RS12555 Genome accession   NZ_CP027061
Coordinates   2562293..2562757 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus sp. ZY-1-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2557293..2567757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5I45_RS19935 - 2557806..2558351 (-) 546 Protein_2436 hypothetical protein -
  C5I45_RS12535 (C5I45_12525) fadH 2558462..2559226 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  C5I45_RS12540 (C5I45_12530) - 2559370..2560233 (+) 864 WP_003154619.1 metallophosphoesterase -
  C5I45_RS12545 (C5I45_12535) - 2560308..2560802 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  C5I45_RS12550 (C5I45_12540) - 2560878..2562170 (+) 1293 WP_107994416.1 MFS transporter -
  C5I45_RS12555 (C5I45_12545) kre 2562293..2562757 (+) 465 WP_003154622.1 YkyB family protein Regulator
  C5I45_RS12560 (C5I45_12550) cheV 2562800..2563711 (-) 912 WP_014304917.1 chemotaxis protein CheV -
  C5I45_RS19770 - 2563900..2564061 (+) 162 WP_007409608.1 hypothetical protein -
  C5I45_RS12570 (C5I45_12560) - 2564262..2565431 (+) 1170 WP_044053155.1 aminotransferase A -
  C5I45_RS12575 (C5I45_12565) - 2565457..2567277 (-) 1821 WP_003154628.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=274824 C5I45_RS12555 WP_003154622.1 2562293..2562757(+) (kre) [Bacillus sp. ZY-1-1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=274824 C5I45_RS12555 WP_003154622.1 2562293..2562757(+) (kre) [Bacillus sp. ZY-1-1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGCTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment