Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   C5I45_RS12450 Genome accession   NZ_CP027061
Coordinates   2546298..2546894 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus sp. ZY-1-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2541298..2551894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5I45_RS12425 (C5I45_12415) mobB 2541674..2542195 (-) 522 WP_003154581.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  C5I45_RS12430 (C5I45_12420) glp 2542156..2543448 (-) 1293 WP_025851480.1 gephyrin-like molybdotransferase Glp -
  C5I45_RS12435 (C5I45_12425) - 2543466..2544485 (-) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  C5I45_RS12440 (C5I45_12430) - 2544537..2545139 (-) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  C5I45_RS12445 (C5I45_12435) - 2545285..2546277 (+) 993 WP_003154589.1 hypothetical protein -
  C5I45_RS12450 (C5I45_12440) rok 2546298..2546894 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  C5I45_RS12455 (C5I45_12445) - 2547346..2547804 (-) 459 WP_003154593.1 TlpA disulfide reductase family protein -
  C5I45_RS12460 (C5I45_12450) - 2548092..2548898 (+) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  C5I45_RS12465 (C5I45_12455) - 2548932..2549177 (-) 246 WP_003154596.1 YkuS family protein -
  C5I45_RS12470 (C5I45_12460) - 2549238..2550365 (-) 1128 WP_003154597.1 N-acetyldiaminopimelate deacetylase -
  C5I45_RS12475 (C5I45_12465) dapD 2550436..2551146 (-) 711 WP_003154598.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  C5I45_RS12480 (C5I45_12470) - 2551228..2551683 (-) 456 WP_003154599.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=274823 C5I45_RS12450 WP_003154591.1 2546298..2546894(-) (rok) [Bacillus sp. ZY-1-1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=274823 C5I45_RS12450 WP_003154591.1 2546298..2546894(-) (rok) [Bacillus sp. ZY-1-1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment