Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C5I45_RS08990 Genome accession   NZ_CP027061
Coordinates   1745846..1746454 (-) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus sp. ZY-1-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1740846..1751454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5I45_RS08970 (C5I45_08960) - 1741082..1741780 (+) 699 WP_003153516.1 DnaD domain-containing protein -
  C5I45_RS08975 (C5I45_08965) nth 1741799..1742458 (+) 660 WP_003153517.1 endonuclease III -
  C5I45_RS08980 (C5I45_08970) - 1742455..1742946 (+) 492 WP_032857086.1 hypothetical protein -
  C5I45_RS08985 (C5I45_08975) - 1743024..1745807 (-) 2784 WP_025852655.1 PBP1A family penicillin-binding protein -
  C5I45_RS08990 (C5I45_08980) recU 1745846..1746454 (-) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  C5I45_RS08995 (C5I45_08985) - 1746496..1747458 (+) 963 WP_014305287.1 DUF2515 domain-containing protein -
  C5I45_RS09000 (C5I45_08990) sspM 1747502..1747606 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  C5I45_RS09005 (C5I45_08995) - 1747812..1748057 (+) 246 WP_003153527.1 DUF5446 family protein -
  C5I45_RS09010 (C5I45_09000) - 1748103..1748471 (+) 369 WP_003153529.1 YppE family protein -
  C5I45_RS09015 (C5I45_09005) - 1748510..1748692 (-) 183 WP_107994338.1 YppF family protein -
  C5I45_RS09020 (C5I45_09010) - 1748879..1749280 (+) 402 WP_048367441.1 YppG family protein -
  C5I45_RS09025 (C5I45_09015) - 1749310..1749723 (-) 414 WP_003153535.1 hypothetical protein -
  C5I45_RS09030 (C5I45_09020) - 1749862..1750368 (+) 507 WP_003153536.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=274816 C5I45_RS08990 WP_003153521.1 1745846..1746454(-) (recU) [Bacillus sp. ZY-1-1]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=274816 C5I45_RS08990 WP_003153521.1 1745846..1746454(-) (recU) [Bacillus sp. ZY-1-1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATCGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment