Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C5I45_RS07920 Genome accession   NZ_CP027061
Coordinates   1499950..1500750 (+) Length   266 a.a.
NCBI ID   WP_107994314.1    Uniprot ID   -
Organism   Bacillus sp. ZY-1-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1494950..1505750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5I45_RS07900 (C5I45_07890) - 1495072..1495917 (+) 846 WP_003153172.1 TlyA family RNA methyltransferase -
  C5I45_RS07905 (C5I45_07895) argR 1496014..1496463 (+) 450 WP_003153173.1 transcriptional regulator ArgR -
  C5I45_RS07910 (C5I45_07900) recN 1496495..1498225 (+) 1731 WP_025852862.1 DNA repair protein RecN Machinery gene
  C5I45_RS07915 (C5I45_07905) spoIVB 1498389..1499669 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  C5I45_RS07920 (C5I45_07910) spo0A 1499950..1500750 (+) 801 WP_107994314.1 sporulation transcription factor Spo0A Regulator
  C5I45_RS07930 (C5I45_07920) alr 1500898..1502079 (-) 1182 WP_025852858.1 alanine racemase -
  C5I45_RS07935 (C5I45_07925) - 1502255..1502467 (-) 213 WP_014305392.1 spore germination protein -
  C5I45_RS07940 (C5I45_07930) - 1502593..1502805 (-) 213 WP_024085590.1 spore germination protein -
  C5I45_RS07945 (C5I45_07935) - 1502931..1504049 (-) 1119 WP_107994589.1 NADH-dependent flavin oxidoreductase -
  C5I45_RS19755 - 1504143..1504280 (-) 138 WP_162918042.1 hypothetical protein -
  C5I45_RS07950 (C5I45_07940) - 1504571..1505203 (-) 633 WP_003153189.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29629.17 Da        Isoelectric Point: 6.6113

>NTDB_id=274815 C5I45_RS07920 WP_107994314.1 1499950..1500750(+) (spo0A) [Bacillus sp. ZY-1-1]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=274815 C5I45_RS07920 WP_107994314.1 1499950..1500750(+) (spo0A) [Bacillus sp. ZY-1-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCAAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCCC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCAGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

97.004

100

0.974

Multiple sequence alignment