Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   D2M30_RS05325 Genome accession   NZ_CP032146
Coordinates   1038658..1042050 (+) Length   1130 a.a.
NCBI ID   WP_125122351.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1033658..1047050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS05315 (D2M30_05330) addA 1033718..1037422 (+) 3705 WP_125122349.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  D2M30_RS05320 (D2M30_05335) sbcD 1037489..1038661 (+) 1173 WP_125122350.1 exonuclease subunit SbcD -
  D2M30_RS05325 (D2M30_05340) sbcC 1038658..1042050 (+) 3393 WP_125122351.1 exonuclease subunit SbcC Machinery gene
  D2M30_RS05330 (D2M30_05345) - 1042066..1042365 (+) 300 WP_125122352.1 HNH endonuclease -
  D2M30_RS05335 (D2M30_05350) - 1042406..1042624 (-) 219 WP_013351765.1 spore germination protein -
  D2M30_RS05340 (D2M30_05355) - 1042664..1043059 (-) 396 WP_014470012.1 spore germination protein GerPE -
  D2M30_RS05345 (D2M30_05360) - 1043059..1043235 (-) 177 WP_013351767.1 hypothetical protein -
  D2M30_RS05350 (D2M30_05365) - 1043232..1043852 (-) 621 WP_013351768.1 spore germination protein GerPC -
  D2M30_RS05355 (D2M30_05370) - 1043887..1044120 (-) 234 WP_014470013.1 spore germination protein GerPB -
  D2M30_RS05360 (D2M30_05375) - 1044133..1044354 (-) 222 WP_003155135.1 spore germination protein -
  D2M30_RS21170 - 1044651..1044764 (-) 114 Protein_1000 aspartyl-phosphate phosphatase Spo0E family protein -
  D2M30_RS05370 (D2M30_05385) - 1044982..1045887 (+) 906 WP_125122353.1 fumarylacetoacetate hydrolase family protein -
  D2M30_RS05375 (D2M30_05390) - 1045981..1046337 (+) 357 WP_013351772.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128166.22 Da        Isoelectric Point: 5.4638

>NTDB_id=274795 D2M30_RS05325 WP_125122351.1 1038658..1042050(+) (sbcC) [Bacillus amyloliquefaciens strain YP6]
MKPILLTIKGLHSFREEQTIDFDGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKEEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEAALKLAEQQFHEANERLEAAEKKRVQAR
ERFENHQEIWNLQTERDEYEARQEKLEEKRPYITGLTDRLKEAETALALEPYADRYTEAVRRKERAEQEHELAKRKLEAE
TASFTRQNEAYEAWRVHKAEQEPKLVKEEELYQRLSAIEQKLLEAKKEAERTKAEHGKKEEEYEAASKQLTAVKDRLTRG
QNRQNELKEELKAVQVTADERKKCQTAAQLAAGFQQTQEQIKKERVNLTAQLKNMEKLNGESEALSAKAKSEEEDITRAY
QTLQTVYHMVCETERSLKAAAERADKTQADLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRSRSAHETYSPDTA
VQERLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQNARVPELEAASSISGLPLDEAFSAVRLEWKQMKQDM
LSVREKVTRLISTYQKTVKQAEQLAERIRYEEKEADRLRHSLEELESLSESCLNQYNESCGDIPLSRIDAWQASIDEKDR
QAEEFEKRIETSIAFLKEHEDEKERLQEKKHRLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLDAVRQELQL
LKSKEQTLFDALQQAQQSLNDAKGRESGSLMSLRDAESALEKAQNDWYGKSKDTGFAEPDQVKKSLLPKERAEEMKREID
EFLDGSKQLSANIRRVTDKLAGRRVTEEEWTASVSLLEQAETESGAAKEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTMEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=274795 D2M30_RS05325 WP_125122351.1 1038658..1042050(+) (sbcC) [Bacillus amyloliquefaciens strain YP6]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGAGAAGAACAGACCATTGACTTTGACGGACTGTCCGG
TGCCGGGGTGTTCGGAATTTTCGGCCCGACGGGAAGCGGAAAGTCGTCGATCCTTGATGCGATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATCCTGAACCATGCCGAAGATCAGCTCGCCGTCTCTTTTACATTC
GCGCTTCAATCCGGCCACAGGGTGTCGTACAAAGTAGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTGAAAACCGC
CCTTTGCCGCTTGATTGAAATCAAAGAGGAACAAACCGTGCTTGCGGATAAAGCGAATGAAGTGAACAAAAAGGTGGAAG
AGCTTCTTGGCCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTCCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTG
AAAGGCGCGGAAAGAAGACATATGCTGCAGCGCCTTTTTAATCTGGAACAGTACGGTGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCAGCGAAAAAAAATGAGATGCTGGCCGAACAATCCGGCCTCGGAGACGCGGGGGAAGCCG
CGCTGAAGCTGGCTGAACAGCAGTTTCACGAAGCGAATGAACGGCTTGAAGCGGCTGAGAAGAAACGGGTCCAAGCAAGA
GAACGTTTTGAGAATCACCAGGAGATTTGGAACTTGCAGACAGAGAGAGACGAATATGAGGCGCGGCAGGAAAAGCTCGA
GGAAAAACGCCCGTATATTACGGGTTTGACTGACCGTCTTAAAGAAGCGGAAACCGCTCTCGCTCTTGAACCGTATGCAG
ATCGCTACACGGAAGCCGTCCGCCGGAAGGAGCGCGCCGAGCAGGAGCACGAACTGGCCAAACGGAAATTAGAGGCGGAA
ACCGCTTCATTTACCCGGCAAAATGAAGCCTATGAAGCGTGGCGGGTTCATAAGGCTGAACAAGAGCCGAAGCTTGTCAA
GGAAGAAGAATTGTATCAAAGATTGTCAGCCATTGAACAAAAGCTGCTTGAAGCAAAAAAAGAAGCGGAAAGAACAAAGG
CGGAGCACGGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGACCGCAGTGAAAGACCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTTCAAGTGACCGCTGATGAACGGAAAAAATGCCAGACCGC
CGCACAGCTGGCAGCCGGCTTTCAGCAGACACAGGAACAAATCAAGAAAGAACGGGTCAATCTGACAGCCCAGTTGAAAA
ACATGGAGAAGCTGAACGGAGAAAGCGAGGCGCTCAGCGCAAAGGCGAAATCGGAAGAAGAGGACATTACGCGCGCTTAT
CAAACACTTCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCGGACAAAAC
GCAAGCCGACCTGCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTAATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCAACGCAGCATGACCGTTCGCGCTCCGCTCATGAAACATATTCGCCTGATACGGCT
GTACAGGAACGTTTGCAGCAGGTGGAAGCGCTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACGGCCAAGGT
TGCATTAGAAGAGCAGTCCGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAACGCCCGGGTCCCGGAGCTGGAAGCCG
CTTCTTCCATCAGCGGCCTCCCGCTTGATGAAGCGTTCAGCGCCGTCCGCCTGGAGTGGAAACAAATGAAACAGGATATG
CTGTCGGTAAGAGAGAAGGTCACGAGACTGATCAGTACCTATCAAAAGACGGTGAAACAAGCTGAGCAGCTGGCCGAACG
AATCCGCTATGAGGAAAAAGAAGCAGACCGCCTCAGACATTCATTAGAAGAGCTCGAATCGCTGTCAGAAAGCTGCTTGA
ATCAGTACAACGAATCCTGCGGGGATATTCCGTTAAGCCGGATTGACGCCTGGCAGGCTTCGATAGACGAAAAGGACAGG
CAGGCAGAGGAATTCGAGAAGCGCATTGAAACAAGCATCGCCTTCCTAAAGGAACATGAAGATGAGAAAGAACGGCTGCA
GGAGAAGAAGCATCGGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCAGAGCGCCTGCAGCAGGTCATTGACGGAT
ATGAACAAGAGCTAGGAACAGCAGCTGAAGAAACATCCATTTCTGCAAAGCTTGACGCGGTGCGGCAGGAATTACAGCTT
TTAAAATCGAAAGAACAGACCTTATTCGATGCGCTGCAGCAGGCTCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
CGGGAGCCTCATGTCACTGCGGGACGCTGAGTCCGCCCTTGAGAAAGCGCAAAATGACTGGTACGGGAAATCAAAAGACA
CCGGGTTTGCCGAGCCGGATCAAGTCAAAAAAAGCCTGCTTCCGAAAGAGCGGGCCGAGGAAATGAAAAGAGAAATTGAT
GAATTTCTGGACGGCTCAAAGCAGCTTTCGGCAAATATCCGCCGTGTCACTGATAAATTAGCCGGCCGCCGGGTAACGGA
AGAAGAATGGACAGCATCGGTTTCTCTGCTGGAGCAGGCAGAGACTGAGTCAGGCGCCGCCAAGGAAGAAAAAGGAGCCC
AGGCAAAAGCCTTTGCGGTGATGCAGAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAGGAACAGCTGGA
AAGCGTGGCCCGAGACGCCTCTGCCCGGCTTGGAGCGCTGACAAGACAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GCTTTGTCATGCGCGATGACGCGAATGGCGGCGTCAAACGCCCAGTATCAAGCCTTTCCGGCGGTGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCTCTGTCCGCCCAGATTCAGCTGCGGGGGCAATATCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACGCTTGACCAAGGGCTTTTAGACACCGTTGTCACAGCGCTGGAAAAGCTGCAATCGGATAATTTGTCCG
TCGGGGTGATCAGCCATGTGCAGGAGCTCAGAGCGCGGCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGA
AAAGGCACCCGGGTCACAATGGAGATTATGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(6-271)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.493

100

0.648