Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   C5I45_RS01785 Genome accession   NZ_CP027061
Coordinates   344363..345508 (-) Length   381 a.a.
NCBI ID   WP_107994197.1    Uniprot ID   -
Organism   Bacillus sp. ZY-1-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 339363..350508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5I45_RS01735 (C5I45_01735) speE 339656..340486 (+) 831 WP_003151052.1 spermidine synthase -
  C5I45_RS01740 (C5I45_01740) speB 340546..341418 (+) 873 WP_003151054.1 agmatinase -
  C5I45_RS01745 (C5I45_01745) - 341588..341806 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  C5I45_RS01755 (C5I45_01755) - 342397..342909 (-) 513 WP_003151059.1 stage II sporulation protein M -
  C5I45_RS01760 (C5I45_01760) - 342953..343234 (-) 282 WP_003151060.1 hypothetical protein -
  C5I45_RS19835 (C5I45_01765) - 343422..343607 (-) 186 Protein_342 DUF4177 domain-containing protein -
  C5I45_RS01770 (C5I45_01770) - 343642..343845 (-) 204 WP_069473623.1 hypothetical protein -
  C5I45_RS01775 (C5I45_01775) - 343859..344062 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  C5I45_RS01780 (C5I45_01780) - 344260..344379 (-) 120 WP_003151066.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  C5I45_RS01785 (C5I45_01785) rapF 344363..345508 (-) 1146 WP_107994197.1 tetratricopeptide repeat protein Regulator
  C5I45_RS01790 (C5I45_01790) - 345800..346228 (+) 429 WP_003151069.1 DUF1934 family protein -
  C5I45_RS01795 (C5I45_01795) argS 346225..347895 (+) 1671 WP_003151071.1 arginine--tRNA ligase -
  C5I45_RS01800 (C5I45_01800) narK 348030..349220 (+) 1191 WP_095315495.1 nitrate transporter NarK -
  C5I45_RS01805 (C5I45_01805) - 349318..350034 (+) 717 WP_014306017.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45313.45 Da        Isoelectric Point: 4.9969

>NTDB_id=274781 C5I45_RS01785 WP_107994197.1 344363..345508(-) (rapF) [Bacillus sp. ZY-1-1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIHSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=274781 C5I45_RS01785 WP_107994197.1 344363..345508(-) (rapF) [Bacillus sp. ZY-1-1]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCCATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(223-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

74.541

100

0.745
  rapC Bacillus subtilis subsp. subtilis str. 168

52.895

99.738

0.528

Multiple sequence alignment