Detailed information NTG0274777

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: D2M30_RS02560
• Genome accession: NZ_CP032146
• Coordinates: 484749..485924 (+)
• Length: 391 a.a.
• NCBI ID: WP_125122089.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain YP6
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 479749..490924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2M30_RS02530 (D2M30_02530)	-	480524..480979 (+)	456	WP_125123586.1	MarR family winged helix-turn-helix transcriptional regulator	-
D2M30_RS02535 (D2M30_02535)	-	480996..481514 (+)	519	WP_125122085.1	GNAT family N-acetyltransferase	-
D2M30_RS02540 (D2M30_02540)	-	481540..482163 (+)	624	WP_125122086.1	FMN-binding negative transcriptional regulator	-
D2M30_RS02545 (D2M30_02545)	-	482248..482886 (+)	639	WP_125122087.1	HD domain-containing protein	-
D2M30_RS02550 (D2M30_02550)	-	483012..483203 (+)	192	Protein_455	hypothetical protein	-
D2M30_RS02555 (D2M30_02555)	-	483481..484308 (+)	828	WP_125122088.1	hypothetical protein	-
D2M30_RS02560 (D2M30_02560)	rapC	484749..485924 (+)	1176	WP_125122089.1	Rap family tetratricopeptide repeat protein	Regulator
D2M30_RS02570 (D2M30_02570)	-	486602..487912 (+)	1311	WP_125122090.1	DUF3238 domain-containing protein	-
D2M30_RS02580 (D2M30_02580)	-	488758..489705 (-)	948	WP_125122091.1	alpha/beta hydrolase	-
D2M30_RS02585 (D2M30_02585)	-	489796..490215 (-)	420	WP_185715976.1	organic hydroperoxide resistance protein	-
D2M30_RS02590 (D2M30_02590)	-	490480..490917 (+)	438	WP_014469791.1	MarR family winged helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 46349.84 Da
• Isoelectric Point: 5.0831

>NTDB_id=274777 D2M30_RS02560 WP_125122089.1 484749..485924(+) (rapC) [Bacillus amyloliquefaciens strain YP6]
MQQGFLKRSKIPYDLVTKKLNAWYMGIKSDLVDEAERIKVEAEAELANMEENQDALLYYQLLEFRHEIMLSYMKSKNMDS
LENAYETLREIESQGQLTGMLEYYFYFFMGMYEFRRKELTTAISAYRIAEKKLFEVEDEIERAEFFFKVSHVYYYMKQTY
FSLNYANRALKIFKQYDAYAVQTIRCQNIIAGNLIDSLDYKRALDVFRDTLRIAQSIGEDYLIGMSRMNIGICYDYIGDY
DKASEYLQTSLEFFEKTEHIFVTKTLFNIVNVKTKQKALAEALPYLKKGQSVAKKYGDSEYDAKFKIIEGLYFSGDEYSL
IEEAFSYLNEKRMFGDIENFAIRVADYFYEKGDLTRSNEYYRLSIEARRKIKKGEIINENQPDFVYSHFIG

Nucleotide

• Length: 1176 bp

>NTDB_id=274777 D2M30_RS02560 WP_125122089.1 484749..485924(+) (rapC) [Bacillus amyloliquefaciens strain YP6]
TTGCAGCAGGGTTTTTTAAAGAGAAGCAAAATTCCATATGATTTGGTGACAAAAAAACTAAATGCTTGGTACATGGGTAT
AAAAAGTGATTTGGTTGATGAAGCAGAAAGAATTAAAGTGGAAGCTGAAGCTGAACTAGCTAATATGGAAGAAAATCAAG
ATGCTCTATTATATTATCAGCTGCTAGAATTCAGACATGAAATCATGTTGAGCTATATGAAGTCAAAGAATATGGATAGC
TTGGAAAATGCATATGAGACTCTTAGGGAAATTGAATCCCAAGGTCAATTAACCGGTATGTTGGAGTATTATTTTTATTT
CTTTATGGGTATGTATGAATTTAGAAGAAAAGAGCTTACTACAGCTATAAGTGCTTATCGAATCGCGGAGAAAAAGTTAT
TTGAGGTGGAAGACGAAATTGAAAGGGCGGAGTTCTTTTTTAAAGTCTCCCATGTATATTACTACATGAAGCAGACTTAT
TTCTCTTTAAACTATGCCAATCGGGCGCTTAAAATTTTCAAACAGTACGATGCGTATGCAGTTCAAACCATAAGATGTCA
AAATATAATTGCGGGTAATTTAATTGACTCTTTGGATTATAAAAGAGCACTAGATGTGTTTAGAGACACATTGCGTATAG
CCCAATCAATTGGGGAGGATTACTTAATTGGTATGTCTCGAATGAATATTGGTATTTGTTATGATTACATAGGTGATTAT
GATAAAGCCTCTGAATATTTACAAACCTCATTAGAGTTTTTTGAAAAGACTGAACATATATTCGTGACAAAAACATTGTT
CAATATAGTAAACGTTAAAACAAAACAGAAGGCTCTGGCTGAAGCCTTACCTTATTTAAAAAAAGGGCAATCTGTCGCAA
AGAAATACGGGGATTCAGAATATGATGCAAAATTCAAGATTATAGAAGGACTTTATTTTAGTGGTGATGAATATTCTTTA
ATTGAAGAGGCTTTTTCGTACCTGAATGAAAAAAGAATGTTCGGAGACATTGAAAATTTTGCAATCAGAGTAGCAGATTA
TTTTTATGAAAAAGGGGATTTAACACGGTCCAATGAGTATTATCGACTGAGTATTGAAGCAAGACGAAAAATAAAAAAAG
GGGAGATTATTAATGAAAATCAGCCGGACTTTGTTTACAGTCATTTTATTGGGTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (199-256)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (10-70)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.6	95.908	0.361