Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   D2M30_RS02190 Genome accession   NZ_CP032146
Coordinates   424848..425282 (+) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain YP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 419848..430282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS02160 (D2M30_02165) - 420513..421376 (+) 864 WP_125122064.1 SDR family oxidoreductase -
  D2M30_RS02165 (D2M30_02170) - 421389..421892 (+) 504 WP_065521888.1 D-lyxose/D-mannose family sugar isomerase -
  D2M30_RS02170 (D2M30_02175) - 421979..422602 (+) 624 WP_125122065.1 GNAT family N-acetyltransferase -
  D2M30_RS02175 (D2M30_02180) - 422609..423031 (+) 423 WP_065521886.1 pyridoxamine 5'-phosphate oxidase family protein -
  D2M30_RS02180 (D2M30_02185) - 423531..424340 (+) 810 WP_013351047.1 lipid II flippase Amj family protein -
  D2M30_RS02185 (D2M30_02190) - 424384..424674 (-) 291 WP_125122066.1 DUF3817 domain-containing protein -
  D2M30_RS02190 (D2M30_02195) lrpC 424848..425282 (+) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  D2M30_RS02195 (D2M30_02200) - 425347..427533 (+) 2187 WP_065980736.1 DNA topoisomerase III -
  D2M30_RS02200 (D2M30_02205) - 427769..428854 (+) 1086 WP_125122067.1 lipoprotein YdaJ -
  D2M30_RS02205 (D2M30_02210) - 428835..429683 (+) 849 WP_125122068.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=274776 D2M30_RS02190 WP_003156263.1 424848..425282(+) (lrpC) [Bacillus amyloliquefaciens strain YP6]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=274776 D2M30_RS02190 WP_003156263.1 424848..425282(+) (lrpC) [Bacillus amyloliquefaciens strain YP6]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGAAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGGCAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTTTCCTGCATTGTTGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799