Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D3F09_RS24815 Genome accession   NZ_CP032145
Coordinates   5075470..5075946 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain 15.TR.026_OXA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5070470..5080946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3F09_RS24790 (D3F09_26090) - 5070869..5073715 (+) 2847 WP_023910065.1 Ag43/Cah family autotransporter adhesin -
  D3F09_RS24795 (D3F09_26095) - 5073786..5073971 (+) 186 WP_001550547.1 DUF905 family protein -
  D3F09_RS24805 (D3F09_26105) - 5074072..5074893 (+) 822 WP_001551997.1 DUF932 domain-containing protein -
  D3F09_RS24810 (D3F09_26110) - 5074975..5075454 (+) 480 WP_001550549.1 antirestriction protein -
  D3F09_RS24815 (D3F09_26115) radC 5075470..5075946 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  D3F09_RS24820 (D3F09_26120) - 5076015..5076236 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  D3F09_RS24825 (D3F09_26125) - 5076399..5076767 (+) 369 WP_001550550.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D3F09_RS26225 - 5076857..5076948 (+) 92 Protein_4797 TA system toxin CbtA family protein -
  D3F09_RS24830 (D3F09_26130) - 5076956..5077258 (+) 303 WP_019843007.1 class II aldolase/adducin family protein -
  D3F09_RS24835 (D3F09_26135) - 5077362..5078366 (+) 1005 WP_001519297.1 GRP family sugar transporter -
  D3F09_RS24840 (D3F09_26140) yjhU 5078407..5079393 (-) 987 WP_001550553.1 sugar-binding transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=274752 D3F09_RS24815 WP_001186726.1 5075470..5075946(+) (radC) [Escherichia coli strain 15.TR.026_OXA]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274752 D3F09_RS24815 WP_001186726.1 5075470..5075946(+) (radC) [Escherichia coli strain 15.TR.026_OXA]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392