Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D3F09_RS23375 Genome accession   NZ_CP032145
Coordinates   4807581..4808057 (-) Length   158 a.a.
NCBI ID   WP_001186193.1    Uniprot ID   A0A0H2Z4W9
Organism   Escherichia coli strain 15.TR.026_OXA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4802581..4813057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3F09_RS23340 (D3F09_24600) cadC 4802922..4804460 (-) 1539 WP_001187178.1 lysine decarboxylation/transport transcriptional activator CadC -
  D3F09_RS23345 (D3F09_24610) - 4805295..4805855 (-) 561 Protein_4518 DUF4942 domain-containing protein -
  D3F09_RS23350 (D3F09_24615) - 4805940..4806137 (-) 198 WP_085949158.1 DUF957 domain-containing protein -
  D3F09_RS23355 (D3F09_24620) - 4806165..4806362 (-) 198 Protein_4520 DUF5983 family protein -
  D3F09_RS23360 (D3F09_24625) cbtA 4806359..4806736 (-) 378 WP_000854820.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  D3F09_RS23365 (D3F09_24630) - 4806825..4807193 (-) 369 WP_001285610.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D3F09_RS23370 (D3F09_24635) - 4807273..4807494 (-) 222 WP_000692347.1 DUF987 domain-containing protein -
  D3F09_RS23375 (D3F09_24640) radC 4807581..4808057 (-) 477 WP_001186193.1 RadC family protein Machinery gene
  D3F09_RS23380 (D3F09_24645) - 4808072..4808551 (-) 480 WP_000706978.1 antirestriction protein -
  D3F09_RS23385 (D3F09_24650) - 4808817..4809635 (-) 819 WP_001175155.1 DUF932 domain-containing protein -
  D3F09_RS23390 (D3F09_24655) - 4809725..4809958 (-) 234 WP_000883181.1 DUF905 family protein -
  D3F09_RS23395 (D3F09_24660) - 4809964..4810641 (-) 678 WP_060579144.1 hypothetical protein -
  D3F09_RS23400 (D3F09_24665) - 4810792..4811472 (-) 681 WP_021515201.1 WYL domain-containing protein -
  D3F09_RS23405 (D3F09_24670) - 4811675..4812559 (-) 885 WP_001116795.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=274750 D3F09_RS23375 WP_001186193.1 4807581..4808057(-) (radC) [Escherichia coli strain 15.TR.026_OXA]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274750 D3F09_RS23375 WP_001186193.1 4807581..4808057(-) (radC) [Escherichia coli strain 15.TR.026_OXA]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGTGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2Z4W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment