Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D3F09_RS20695 Genome accession   NZ_CP032145
Coordinates   4222575..4223051 (+) Length   158 a.a.
NCBI ID   WP_001186724.1    Uniprot ID   -
Organism   Escherichia coli strain 15.TR.026_OXA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4217575..4228051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3F09_RS20675 (D3F09_21770) - 4217990..4220836 (+) 2847 WP_021536654.1 Ag43/Cah family autotransporter adhesin -
  D3F09_RS20685 (D3F09_21780) - 4221164..4221982 (+) 819 WP_021536653.1 DUF932 domain-containing protein -
  D3F09_RS20690 (D3F09_21785) - 4222074..4222559 (+) 486 WP_001565139.1 antirestriction protein -
  D3F09_RS20695 (D3F09_21790) radC 4222575..4223051 (+) 477 WP_001186724.1 RadC family protein Machinery gene
  D3F09_RS20700 (D3F09_21795) - 4223120..4223341 (+) 222 WP_000692303.1 DUF987 domain-containing protein -
  D3F09_RS20705 (D3F09_21800) - 4223416..4223784 (+) 369 WP_001565140.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D3F09_RS20710 (D3F09_21805) - 4223874..4224251 (+) 378 WP_001565141.1 TA system toxin CbtA family protein -
  D3F09_RS20715 (D3F09_21810) - 4224248..4224736 (+) 489 WP_001565142.1 DUF5983 family protein -
  D3F09_RS20720 (D3F09_21815) - 4224748..4224945 (+) 198 WP_000839256.1 DUF957 domain-containing protein -
  D3F09_RS20725 (D3F09_21820) - 4225030..4225872 (+) 843 WP_001565143.1 DUF4942 domain-containing protein -
  D3F09_RS26025 (D3F09_21830) rhuM 4226110..4226255 (+) 146 Protein_4026 RhuM family protein -
  D3F09_RS20735 (D3F09_21835) setC 4226666..4227850 (+) 1185 WP_001172876.1 sugar efflux transporter -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.35 Da        Isoelectric Point: 7.2020

>NTDB_id=274730 D3F09_RS20695 WP_001186724.1 4222575..4223051(+) (radC) [Escherichia coli strain 15.TR.026_OXA]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274730 D3F09_RS20695 WP_001186724.1 4222575..4223051(+) (radC) [Escherichia coli strain 15.TR.026_OXA]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCAGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392