Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D3F09_RS20310 Genome accession   NZ_CP032145
Coordinates   4152227..4152895 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain 15.TR.026_OXA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4147227..4157895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3F09_RS20280 (D3F09_21355) rfaQ 4147405..4148463 (-) 1059 WP_001521608.1 lipopolysaccharide core heptosyltransferase RfaQ -
  D3F09_RS20285 (D3F09_21360) waaA 4148876..4150153 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  D3F09_RS20290 (D3F09_21365) coaD 4150161..4150640 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  D3F09_RS20295 (D3F09_21370) mutM 4150679..4151488 (-) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  D3F09_RS20300 (D3F09_21375) rpmG 4151586..4151753 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  D3F09_RS20305 (D3F09_21380) rpmB 4151774..4152010 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  D3F09_RS20310 (D3F09_21385) radC 4152227..4152895 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  D3F09_RS20315 (D3F09_21390) coaBC 4153067..4154287 (+) 1221 WP_000050171.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D3F09_RS20320 (D3F09_21395) dut 4154265..4154723 (+) 459 WP_000976070.1 dUTP diphosphatase -
  D3F09_RS20325 (D3F09_21400) slmA 4154830..4155426 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  D3F09_RS20330 (D3F09_21405) pyrE 4155463..4156104 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  D3F09_RS20335 (D3F09_21410) rph 4156170..4156886 (-) 717 WP_001247093.1 ribonuclease PH -
  D3F09_RS20340 (D3F09_21420) yicC 4157013..4157876 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=274728 D3F09_RS20310 WP_001297375.1 4152227..4152895(-) (radC) [Escherichia coli strain 15.TR.026_OXA]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=274728 D3F09_RS20310 WP_001297375.1 4152227..4152895(-) (radC) [Escherichia coli strain 15.TR.026_OXA]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTAGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGGGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496