Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   D3F09_RS16795 Genome accession   NZ_CP032145
Coordinates   3430131..3431363 (+) Length   410 a.a.
NCBI ID   WP_029701471.1    Uniprot ID   -
Organism   Escherichia coli strain 15.TR.026_OXA     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3425131..3436363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3F09_RS16780 (D3F09_17635) - 3425646..3427322 (+) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -
  D3F09_RS16785 (D3F09_17640) kdsB 3427332..3428072 (+) 741 WP_001604840.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D3F09_RS16790 (D3F09_17645) - 3428069..3430096 (+) 2028 WP_029701472.1 capsular polysaccharide biosynthesis protein -
  D3F09_RS16795 (D3F09_17650) kpsS 3430131..3431363 (+) 1233 WP_029701471.1 capsular biosynthesis protein Regulator
  D3F09_RS16800 (D3F09_17655) - 3431625..3432554 (-) 930 WP_086625793.1 hypothetical protein -
  D3F09_RS16805 (D3F09_17660) - 3433006..3434163 (-) 1158 WP_029701469.1 hypothetical protein -
  D3F09_RS16810 (D3F09_17665) - 3434201..3435391 (-) 1191 WP_001542353.1 CDP-glycerol glycerophosphotransferase family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48876.46 Da        Isoelectric Point: 9.9544

>NTDB_id=274713 D3F09_RS16795 WP_029701471.1 3430131..3431363(+) (kpsS) [Escherichia coli strain 15.TR.026_OXA]
MQDNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLQRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMVFNKIKLD
EYFQSVSCQV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=274713 D3F09_RS16795 WP_029701471.1 3430131..3431363(+) (kpsS) [Escherichia coli strain 15.TR.026_OXA]
ATGCAAGACAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGTTGGCTGCGAGATCTCCAACGACAATATGAC
TTTGATACCATCCTCTGTTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAACAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTACGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATATACGTGCACGATCTCCCAATGCCGGAATTATTACGCCACGCAAAAGCAGTAGTG
ACAATTAACAGTACGGCAGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGATTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGGTTTTTAACAAGATAAAACTGGAT
GAATATTTTCAGAGCGTGTCGTGTCAAGTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

96.585

0.383

Multiple sequence alignment