Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D3F09_RS16725 Genome accession   NZ_CP032145
Coordinates   3418431..3418907 (+) Length   158 a.a.
NCBI ID   WP_001347688.1    Uniprot ID   -
Organism   Escherichia coli strain 15.TR.026_OXA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3413431..3423907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3F09_RS16695 (D3F09_17550) - 3413597..3416113 (+) 2517 WP_015833304.1 hypothetical protein -
  D3F09_RS16700 (D3F09_17555) - 3416190..3416645 (+) 456 WP_000581493.1 IrmA family protein -
  D3F09_RS16705 (D3F09_17560) - 3416724..3416957 (+) 234 WP_001119719.1 DUF905 family protein -
  D3F09_RS16715 (D3F09_17570) - 3417057..3417875 (+) 819 WP_001234642.1 DUF932 domain-containing protein -
  D3F09_RS16720 (D3F09_17575) - 3417930..3418415 (+) 486 WP_029701480.1 antirestriction protein -
  D3F09_RS16725 (D3F09_17580) radC 3418431..3418907 (+) 477 WP_001347688.1 RadC family protein Machinery gene
  D3F09_RS16730 (D3F09_17585) - 3418970..3419191 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  D3F09_RS16735 (D3F09_17590) - 3419210..3419853 (+) 644 Protein_3254 antitoxin of toxin-antitoxin stability system -
  D3F09_RS16740 (D3F09_17595) - 3419903..3420271 (+) 369 WP_001320394.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D3F09_RS16745 (D3F09_17600) - 3420361..3420735 (+) 375 WP_001094454.1 TA system toxin CbtA family protein -
  D3F09_RS16750 (D3F09_17605) - 3420732..3421220 (+) 489 WP_000777545.1 DUF5983 family protein -
  D3F09_RS16755 (D3F09_17610) - 3421232..3421429 (+) 198 WP_000839276.1 DUF957 domain-containing protein -
  D3F09_RS16760 (D3F09_17615) - 3421526..3422095 (+) 570 WP_001290250.1 DUF4942 domain-containing protein -
  D3F09_RS16765 (D3F09_17620) - 3422438..3422608 (+) 171 Protein_3260 IS110 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17615.28 Da        Isoelectric Point: 7.6151

>NTDB_id=274712 D3F09_RS16725 WP_001347688.1 3418431..3418907(+) (radC) [Escherichia coli strain 15.TR.026_OXA]
MQQLSFLPGAMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274712 D3F09_RS16725 WP_001347688.1 3418431..3418907(+) (radC) [Escherichia coli strain 15.TR.026_OXA]
ATGCAACAACTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392