Detailed information NTG0274707

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D3F09_RS15085
• Genome accession: NZ_CP032145
• Coordinates: 3094866..3095858 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 15.TR.026_OXA
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3089866..3100858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3F09_RS15055 (D3F09_15845)	hypE	3090518..3091528 (+)	1011	WP_001059912.1	hydrogenase maturation carbamoyl dehydratase HypE	-
D3F09_RS15060 (D3F09_15850)	flhA	3091602..3093446 (+)	1845	Protein_2931	formate hydrogenlyase transcriptional activator FlhA	-
D3F09_RS15070 (D3F09_15860)	-	3093511..3094215 (+)	705	WP_001067858.1	IS6-like element IS26 family transposase	-
D3F09_RS15080 (D3F09_15870)	-	3094338..3094745 (+)	408	WP_001208066.1	MarR family transcriptional regulator	-
D3F09_RS15085 (D3F09_15875)	rpoS	3094866..3095858 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
D3F09_RS15090 (D3F09_15880)	nlpD	3095921..3097015 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
D3F09_RS15095 (D3F09_15885)	pcm	3097200..3097826 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
D3F09_RS15100 (D3F09_15890)	surE	3097820..3098581 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
D3F09_RS15105 (D3F09_15895)	truD	3098562..3099611 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
D3F09_RS15110 (D3F09_15900)	ispF	3099608..3100087 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D3F09_RS15115 (D3F09_15905)	ispD	3100087..3100797 (-)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=274707 D3F09_RS15085 WP_000081550.1 3094866..3095858(-) (rpoS) [Escherichia coli strain 15.TR.026_OXA]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=274707 D3F09_RS15085 WP_000081550.1 3094866..3095858(-) (rpoS) [Escherichia coli strain 15.TR.026_OXA]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715