Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D3F09_RS11040 Genome accession   NZ_CP032145
Coordinates   2264052..2264528 (+) Length   158 a.a.
NCBI ID   WP_039267628.1    Uniprot ID   -
Organism   Escherichia coli strain 15.TR.026_OXA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2259052..2269528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3F09_RS11010 (D3F09_11615) - 2259202..2261718 (+) 2517 WP_001315618.1 hypothetical protein -
  D3F09_RS11015 (D3F09_11620) - 2261794..2262249 (+) 456 WP_000581504.1 IrmA family protein -
  D3F09_RS11020 (D3F09_11625) - 2262324..2262557 (+) 234 WP_001119729.1 DUF905 family protein -
  D3F09_RS11030 (D3F09_11635) - 2262657..2263475 (+) 819 WP_060626401.1 DUF932 domain-containing protein -
  D3F09_RS11035 (D3F09_11640) - 2263557..2264036 (+) 480 WP_000860087.1 antirestriction protein -
  D3F09_RS11040 (D3F09_11645) radC 2264052..2264528 (+) 477 WP_039267628.1 RadC family protein Machinery gene
  D3F09_RS11045 (D3F09_11650) yeeT 2264591..2264812 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  D3F09_RS11050 (D3F09_11655) cbeA 2264886..2265254 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D3F09_RS11055 (D3F09_11660) cbtA 2265343..2265717 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  D3F09_RS11060 (D3F09_11665) yeeW 2265714..2265908 (+) 195 WP_000988600.1 DUF5983 family protein -
  D3F09_RS11065 (D3F09_11670) - 2265954..2266034 (+) 81 Protein_2148 hypothetical protein -
  D3F09_RS26725 (D3F09_11675) - 2266323..2266496 (-) 174 WP_071592185.1 transposase domain-containing protein -
  D3F09_RS26730 (D3F09_11680) - 2266523..2266705 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  D3F09_RS11080 (D3F09_11685) tmaR 2266806..2267135 (-) 330 WP_000450409.1 DUF496 family protein -
  D3F09_RS11085 (D3F09_11690) yeeA 2267307..2268365 (-) 1059 WP_001200891.1 FUSC family protein -
  D3F09_RS11090 (D3F09_11695) sbmC 2268563..2269036 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17624.25 Da        Isoelectric Point: 6.9859

>NTDB_id=274694 D3F09_RS11040 WP_039267628.1 2264052..2264528(+) (radC) [Escherichia coli strain 15.TR.026_OXA]
MQQLSFLPGEMTPGERSLILRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274694 D3F09_RS11040 WP_039267628.1 2264052..2264528(+) (radC) [Escherichia coli strain 15.TR.026_OXA]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCTGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGCAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392