Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C5Y82_RS07685 Genome accession   NZ_CP027034
Coordinates   1535465..1536367 (+) Length   300 a.a.
NCBI ID   WP_119124844.1    Uniprot ID   -
Organism   Bacillus pumilus strain 150a     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1530465..1541367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS07665 (C5Y82_07665) - 1531131..1532867 (+) 1737 WP_119124842.1 glycosyltransferase -
  C5Y82_RS07670 (C5Y82_07670) - 1532864..1533139 (+) 276 WP_012009944.1 FlhB-like flagellar biosynthesis protein -
  C5Y82_RS07675 (C5Y82_07675) sucC 1533316..1534476 (+) 1161 WP_012009945.1 ADP-forming succinate--CoA ligase subunit beta -
  C5Y82_RS07680 (C5Y82_07680) sucD 1534499..1535401 (+) 903 WP_119124843.1 succinate--CoA ligase subunit alpha -
  C5Y82_RS07685 (C5Y82_07685) dprA 1535465..1536367 (+) 903 WP_119124844.1 DNA-processing protein DprA Machinery gene
  C5Y82_RS07690 (C5Y82_07690) topA 1536561..1538636 (+) 2076 WP_058014000.1 type I DNA topoisomerase -
  C5Y82_RS07695 (C5Y82_07695) trmFO 1538707..1540011 (+) 1305 WP_119124845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C5Y82_RS07700 (C5Y82_07700) xerC 1540074..1540991 (+) 918 WP_119124846.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34166.56 Da        Isoelectric Point: 8.8799

>NTDB_id=274644 C5Y82_RS07685 WP_119124844.1 1535465..1536367(+) (dprA) [Bacillus pumilus strain 150a]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPMYPNTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKENWMIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=274644 C5Y82_RS07685 WP_119124844.1 1535465..1536367(+) (dprA) [Bacillus pumilus strain 150a]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTCACCC
GCCTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCATGTATCCCAACACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCGTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AAAAAATTGTTGGTGAACTTGTAAAGGAAAATTGGATGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGACTTGCACAT
AAAGAGTGCATAAGAAATAAAGGGAAAACGATTGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTGTCTGAGCATCCACCTTATGTCAAGCCAGAAAAGTGGCATT
TTCCTTTGAGGAATCGTTTAATTAGTGCGCTCACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACTGCCTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCCGTTGCAGGATCAATCTTTGATCCTAATTCTACAGG
TCCAGCCAGACTTATACAGCAGGGAGCTAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGTG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Lactococcus lactis subsp. cremoris KW2

38.542

96

0.37

Multiple sequence alignment